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News:
EuroBioC2023 abstract submission closing soon!
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EuroBioc2023
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Bioconductor
12 months ago
Maria Doyle
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News:
BioC2023 abstract submission is now open!
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BioC2023
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written 14 months ago by
Maria Doyle
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News:
EuroBioC2023 abstract submission is open!
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EuroBioC2023
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Bioconductor
14 months ago
Maria Doyle
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News:
Bioc2022 Submissions for talks, demos, workshops and poster now open! Deadline Tomorrow March 29!
presentation
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bioc2022
2.3 years ago • updated 2.1 years ago
shepherl
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Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
ATpoint
★ 4.1k
Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
Comment: Store output of matchPWM()
by
James W. MacDonald
65k
Here's a self contained reproducible example, using part of the example in `?matchPWM` ``` > library(Biostrings) > data(HNF4alpha) > libr…
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Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
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