Biostar ProjectR

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SeqGate TarSeqQC ExperimentHubSoftware projectR

updated 2.1 years ago by ATpoint ★ 2.3k • written 2.1 years ago by Ashish • 0

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microbiomeExplorer tartare projectR

updated 2.1 years ago by Kevin Blighe 3.8k • written 2.1 years ago by amoaristotle ▴ 10

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GEOquery projectR

updated 2.1 years ago by Sean Davis 21k • written 2.1 years ago by jing ▴ 20

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Answer: How to getting synonymous SNPs from BiomaRt before timing out? by James W. MacDonald 62k

Asking for multiple things at once will tend to blow out your results, as you will get every possible combination. ``` > options(timeou…

Comment: Definition of disease_subtype abbreviations by Lucas Schiffer ▴ 240

Hi Sehyun, I do not know myself and can only find one reference in the [template.csv](https://github.com/waldronlab/curatedMetagenomicDataC…

Answer: Are polynomial contrasts for a time factor possible in DESeq2? by ATpoint ★ 2.3k

As you can use a model.matrix() as input for the design you can use a great variety of models. A great read is this work from Ritchie/Smyth…

Comment: does anyone how to create rarefaction curves from a phyloseq object? by RMiller • 0

I am not sure what you have tried, but the "vegan" library (package) has the ability to do rarefaction. So make sure to load `library("veg…

Answer: MSA package fails to be installed - installation of package ‘msa’ had non-zero by stitam • 0

Hi, I came across the same issue when trying to install `msa` in a docker (singularity) container. My base image was `debian:bullseye-20230…

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Popular Question to Robert Castelo ★ 3.0k