Showing : publish • reset
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combine two differential expression methods
edger deseq2 dea publish
updated 8.4 years ago by ★ 29k • written 8.4 years ago by • 0
3
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News: BMC Source Code for Biology and Medicine: R/Bioconductor Workflows Section is calling for papers
workflows publish News
10.4 years ago Levi Waldron ★ 1.1k
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HTMLReport of DESeq2 results with Ensembl Gene Ids
reportingtools publish deseq2
updated 10.9 years ago by ▴ 180 • written 11.1 years ago by • 0
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Error with Reporting Tool and DESeq2
publish deseq2
updated 11.1 years ago by 68k • written 11.1 years ago by • 0
4 results • Page 1 of 1
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Comment: Chip Seq Analysis of RNA Polymerase 2 by Tikaaaq2c • 0
Without proper scaling or an enrichment check , Pol 2 peaks can appear flat against the background. If the data remains noisy, you might w…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack by Tikaaaq2c • 0
Organizing complex transcripts requires the same discipline as managing a digital library on a learning platform. Many researchers use a [S…
Comment: soGGi error by shepherl 4.3k
We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Votes
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2
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