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combine two differential expression methods
edger
deseq2
dea
publish
updated 6.6 years ago by
Aaron Lun
★ 28k • written 6.6 years ago by
roser.navarro
• 0
3
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0
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2.2k
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News:
BMC Source Code for Biology and Medicine: R/Bioconductor Workflows Section is calling for papers
workflows
publish
News
8.7 years ago
Levi Waldron
★ 1.1k
2
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2
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1.6k
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Error with Reporting Tool and DESeq2
publish
deseq2
updated 9.3 years ago by
James W. MacDonald
65k • written 9.3 years ago by
noushin.farnoud
• 0
4
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6
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HTMLReport of DESeq2 results with Ensembl Gene Ids
reportingtools
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deseq2
updated 9.1 years ago by
Federico Marini
▴ 150 • written 9.4 years ago by
noushin.farnoud
• 0
4 results • Page
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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Comment: How to use spike-in information (sequences from another species) with DESeq2::DE
by
maria.soler
• 0
Hi, I have a question barely related to this topic. Do you use a custom reference genome combining your organism and the one used as a spik…
Answer: Differential gene expression analysis results
by
ATpoint
★ 4.1k
Pease do not open multiple posts for the same issue: https://support.bioconductor.org/p/9158194/#9158222 The support site is not meant f…
Comment: deseq2 results
by
sajadahmad41454
• 0
thank you for your response, should i remove or discard that sample? since the red outlier on left represents one of healthy samples.
Comment: deseq2 results
by
swbarnes2
★ 1.4k
It looks like the PCA plot of a real RNASeq experiment. The red outlier on the left might be the mathematical reason why you have few vali…
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Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
Comment: deseq2 results
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
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