Showing : qPCR • reset
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HTqPCR Normalization
qPCR qPCR
updated 13.3 years ago by ▴ 300 • written 13.4 years ago by ▴ 10
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Normalization of array leads to decrease in number of differentially expressed genes
qPCR Normalization qPCR Normalization
updated 13.4 years ago by ▴ 430 • written 13.4 years ago by ▴ 290
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4
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1.9k
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HTqPCR problems
qPCR GO Preprocessing GLAD HTqPCR qPCR GO Preprocessing GLAD HTqPCR
updated 13.4 years ago by ▴ 340 • written 13.4 years ago by ★ 2.0k
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miRNA exiqon panels and HTqPCR
miRNA qPCR PROcess HTqPCR miRNA qPCR PROcess HTqPCR
13.4 years ago Heidi Dvinge ★ 2.0k
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6
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2.8k
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HTqPCR
qPCR GO GLAD HTqPCR qPCR GO GLAD HTqPCR
updated 13.4 years ago by ★ 2.0k • written 13.5 years ago by ▴ 40
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906
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other questions for HTqPCR
qPCR qPCR
13.4 years ago Heidi Dvinge ★ 2.0k
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5
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2.2k
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HTqPCR problem
qPCR qPCR
updated 13.4 years ago by ▴ 200 • written 13.4 years ago by ▴ 860
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1.2k
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HTqPCR
qPCR limma HTqPCR qPCR limma HTqPCR
13.5 years ago Heidi Dvinge ★ 2.0k
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PLS help: is it sound to normalized highthrouput qPCR arrays using vsn?
qPCR Normalization vsn qPCR Normalization vsn
13.6 years ago Ali Mohammadian ▴ 290
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929
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Any code for simulation of qPCR studies?
qPCR qPCR
13.7 years ago Ali Mohammadian ▴ 290
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1.1k
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File formats for high throughput qPCR data
qPCR HTqPCR qPCR HTqPCR
13.7 years ago Heidi Dvinge ★ 2.0k
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1
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1.0k
views
clusterCt {HTqPCR}
qPCR qPCR
updated 13.7 years ago by ★ 2.0k • written 13.7 years ago by ▴ 290
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Estimating fold change from limma 'log2FC' using lumi vst instead of log2 transformation?
Microarray qPCR Normalization limma lumi Microarray qPCR Normalization limma lumi
13.8 years ago Ross ▴ 30
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HTqPCR package
qPCR probe qPCR probe
14.0 years ago Heidi Dvinge ★ 2.0k
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759
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MA plot for highthrouput qPCR assay
qPCR qPCR
14.0 years ago Ali Mohammadian ▴ 290
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1.5k
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Bioconductor 2.9 is released
Transcription Sequencing miRNA qPCR Proteomics Annotation Normalization Visualization cdf
14.1 years ago Dan Tenenbaum ★ 8.2k
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Manual creation of Affybatch object to study highthrouput qPCR experiments.
miRNA qPCR affy miRNA qPCR affy
updated 14.1 years ago by ▴ 300 • written 14.1 years ago by ★ 13k
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1.4k
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HTqPCR
qPCR PROcess HTqPCR qPCR PROcess HTqPCR
14.2 years ago Heidi Dvinge ★ 2.0k
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1
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1.4k
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PCR efficiency correction with HTqPCR
qPCR GO Prostate HTqPCR qPCR GO Prostate HTqPCR
updated 14.2 years ago by ★ 2.0k • written 14.2 years ago by ▴ 20
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2
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1.9k
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Compatibility of Biorad cfx files to HTqPCR?
qPCR HTqPCR qPCR HTqPCR
updated 14.7 years ago by ★ 2.0k • written 14.7 years ago by ▴ 10
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1.1k
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Testing biased microarray data
qPCR limma qPCR limma
updated 14.7 years ago by ★ 3.8k • written 14.7 years ago by ▴ 370
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3
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1.8k
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RNASeq, differential expression between group, and large variance within groups
RNASeq qPCR edgeR DESeq RNASeq qPCR edgeR DESeq
updated 14.7 years ago by ★ 6.0k • written 14.8 years ago by 53k
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6
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HT qPCR - error in scale rank invariant
miRNA qPCR miRNA qPCR
updated 14.8 years ago by ★ 2.0k • written 14.9 years ago by ▴ 810
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4
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1.6k
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HTqPCR questions
qPCR HTqPCR qPCR HTqPCR
updated 14.9 years ago by ▴ 330 • written 14.9 years ago by ★ 2.0k
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2.1k
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HTqPCR R Bioconductor question (problem reading SDS files for qPCR) (Alexander Williams)
qPCR HTqPCR qPCR HTqPCR
14.9 years ago Alexander Williams ▴ 20
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1.7k
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HTqPCR R Bioconductor question (problem reading SDS files for qPCR)
qPCR HTqPCR qPCR HTqPCR
14.9 years ago Alexander Williams ▴ 20
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0
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1.4k
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qPCR 2011 Symposium Talk and Poster CALL
qPCR Genetics microRNA qPCR Genetics microRNA
15.0 years ago qPCR Platform - the reference in real-t… ▴ 170
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qPCR Event Calendar - winter 2010
SNP qPCR Genetics Normalization Clustering Regression Cancer Breast Xenopus laevis probe
15.0 years ago qPCR Platform - the reference in real-t… ▴ 170
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2
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1.8k
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HTqPCR : readCtData problem?
miRNA qPCR HTqPCR miRNA qPCR HTqPCR
15.1 years ago Heidi Dvinge ★ 2.0k
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1.4k
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HTqPCR problem
qPCR GO HTqPCR qPCR GO HTqPCR
15.1 years ago Heidi Dvinge ★ 2.0k
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qPCR Event Calendar - autumn/winter 2010
qPCR Normalization Clustering probe microRNA qPCR Normalization Clustering probe microRNA
15.2 years ago qPCR Platform - the reference in real-t… ▴ 170
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1.6k
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questions concerning quantile normalization in HTqPCR
miRNA qPCR miRNA qPCR
updated 15.2 years ago by ★ 2.0k • written 15.2 years ago by ▴ 810
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1.2k
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normalization usinf the delta Ct method
qPCR Normalization qPCR Normalization
updated 15.2 years ago by ★ 13k • written 15.2 years ago by ▴ 810
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1.6k
views
gcrma vs rma
Microarray qPCR probe ROC limma gcrma Microarray qPCR probe ROC limma gcrma
updated 15.2 years ago by ▴ 260 • written 15.2 years ago by ▴ 330
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1.3k
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Advise on setting up a non-specific filter for differential expression
qPCR qPCR
15.3 years ago Lucia Peixoto ▴ 330
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2
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1.5k
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Advise on setting up a non-specific filter for differential expression
qPCR qPCR
15.3 years ago Tobias Straub ▴ 430
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2
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2.2k
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Bacterial genomics
Sequencing Microarray qPCR genomes Sequencing Microarray qPCR genomes
updated 15.3 years ago by 16k • written 15.3 years ago by ▴ 30
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4
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3.1k
views
HTqPCR to analyze Fluidigm 96.96 Dynamic Array data
qPCR HTqPCR qPCR HTqPCR
updated 15.5 years ago by ★ 2.0k • written 15.5 years ago by ▴ 30
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Experimental design for RNA-Seq
Sequencing qPCR Cancer Sequencing qPCR Cancer
15.5 years ago Jakob Hedegaard ▴ 170
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1.8k
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Reading in data with HTqPCR
qPCR Cancer cycle HTqPCR qPCR Cancer cycle HTqPCR
15.5 years ago Heidi Dvinge ★ 2.0k
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12
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2.6k
views
htqPCR question
miRNA qPCR Normalization limma miRNA qPCR Normalization limma
updated 15.6 years ago by ★ 2.0k • written 15.6 years ago by ▴ 810
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9
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2.2k
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htqPCR question
miRNA qPCR limma miRNA qPCR limma
updated 15.6 years ago by ▴ 810 • written 15.6 years ago by ★ 2.0k
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1.8k
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qPCR event preview - April 2010
miRNA qPCR Normalization probe microRNA cycle miRNA qPCR Normalization probe microRNA
15.6 years ago qPCR Platform - the reference in real-t… ▴ 170
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4
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1.5k
views
HTqPCR only works for 384 qPCR plates
qPCR qPCR
updated 15.6 years ago by ★ 2.0k • written 15.6 years ago by ▴ 810
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1.3k
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qPCR plates containing multiple samples in HTqPCR
qPCR HTqPCR qPCR HTqPCR
15.8 years ago Heidi Dvinge ★ 2.0k
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3
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1.3k
views
HTqPCR and limma and factorial design with no replicates
Microarray qPCR Classification limma HTqPCR ASSIGN Microarray qPCR Classification limma
updated 15.8 years ago by ★ 6.0k • written 15.8 years ago by ▴ 810
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1
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1.4k
views
HTqPCR and limma and factorial design with no replicates
Microarray qPCR Classification limma HTqPCR ASSIGN Microarray qPCR Classification limma
updated 15.8 years ago by ★ 6.0k • written 15.8 years ago by ▴ 810
0
votes
4
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1.4k
views
HTqPCR and factorial design
qPCR HTqPCR qPCR HTqPCR
updated 15.8 years ago by ★ 2.0k • written 15.8 years ago by ▴ 810
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1.5k
views
Bioinformatics Post doc position at UCSF
miRNA Microarray qPCR miRNA Microarray qPCR
15.8 years ago audrey ▴ 280
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1.5k
views
Bioconductor 2.5 is released
Sequencing miRNA Microarray qPCR Annotation Network Bayesian Regression CGH stam Rintact
16.1 years ago Patrick Aboyoun ★ 1.6k
119 results • Page 2 of 3
Recent ...
Replies
Comment: Generalized edgeR functions by Omar • 0
[ragdoll hit](https://ragdollhitstickman.io/) That actually sounds like a reasonable approach, especially if the overlapping intervals repr…
Comment: upstream git branches of bioc-release by TrentonCollier99 • 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments. https://bioc-release.r-univ…
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much! will take that into consideration
Comment: Large logFC but somewhat high FDR by JKim • 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.
Comment: upstream git branches of bioc-release by Jeroen ▴ 10
OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.
Votes
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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