Bioconductor Rcircos

Showing : rcircos • reset

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1.4k

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ggviz ggplot2 gviz circlize Rcircos

7.3 years ago Bogdan ▴ 670

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1.9k

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genomicfeatures rcircos

7.7 years ago chrisclarkson100 ▴ 50

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1.3k

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omiccircos rcircos

8.1 years ago mictadlo ▴ 10

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1.2k

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rcircos bug

8.1 years ago Marcel Ramos 700

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1.9k

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OmicCircos RCircos

updated 8.5 years ago by bernatgel ▴ 150 • written 8.5 years ago by Radek ▴ 90

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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