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rdgidb
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309
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queryDGIdb lexical error for some genes
lexicalerror
rDGIdb
DGIdb
json
9 months ago
Dennis
• 0
0
votes
6
replies
814
views
rDGIdb package inconsistency with web interface
rDGIdb
14 months ago • updated 13 months ago
christopherjamessteel1990
• 0
0
votes
0
replies
705
views
rDGIdb package: score of the results
rDGIdb
r
23 months ago
HELEN
• 0
0
votes
0
replies
659
views
Timeout error when querying DGIDB
rDGIdb
2.6 years ago
Jannah
• 0
0
votes
0
replies
625
views
DGIdb service not available
rDGIdb
3.0 years ago
DannyM
• 0
0
votes
0
replies
751
views
Is there currently something wrong with the rDGIdb API?
rDGIdb
4.2 years ago
mike-zx
• 0
0
votes
1
reply
1.2k
views
What happends with a package in submission through the old issue tracker?
github
package submission
rDGIdb
issue tracker
updated 8.6 years ago by
Martin Morgan
25k • written 8.6 years ago by
Thomas Thurnherr
• 0
7 results • Page
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Answer: How to compare expression levels of genes between scRNAseq and bulkRNAseq?
by
jodan
• 0
Your approach sounds solid! You might also consider plotting a scatter plot comparing log2 fold changes from both datasets to identify gene…
Answer: Unused arguments error without used arguments in GSVA?
by
jodan
• 0
It looks like the ssgseaParam function might not be passing the correct parameters to GSVA::gsva(). The error suggests that minSize and max…
Answer: Using genomicRanges / plyranges to calculate score of peaks within intervals
by
Michael Love
43k
This should be possible with plyranges using `join_overlap` and `group_by` on the metadata from the tile. E.g. create `tile.id` as a variab…
Answer: Reducing and aggregating GRanges with gaps using plyranges
by
Michael Love
43k
I added `min.gapwidth` to `reduce_ranges()` in recent plyranges releases: https://github.com/tidyomics/plyranges/pull/105
Answer: Find exact GRanges match keeping metadata columns
by
Michael Love
43k
You could use `minoverlap` but that requires an integer, not a fraction: ``` gr1 |> join_overlap_left(gr2, minoverlap=6) ``` Plyranges do…
Votes
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Unused arguments error without used arguments in GSVA?
Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte
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