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michael.gaspar
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updated 4 months ago by
SamGG
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written 4 months ago by
das.traveller
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updated 4.0 years ago by
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written 4.0 years ago by
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updated 9.3 years ago by
Jiang, Mike
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written 9.5 years ago by
skiaphrene
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12 months ago
Pilid
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7.9 years ago
akisheev89
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Recent ...
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Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package)
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Poonam
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Hi Michael,
I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank"
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swbarnes2
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1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
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I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
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Gordon Smyth
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It is true that goseq isn't available for Bioc 3.19 (as at 4 May 2024).
In the meantime, you could consider using the goana() and kegga() …
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part:
```
design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa)
colnames(design_intercept) <- c("AltSHP_LA","Al…
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