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read.maimages
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problem with update limma - green channel missing
limma
bioconductor
read.maimages
agilent
8x60K
9.2 years ago
wd
▴ 30
1
vote
2
replies
1.6k
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Question about read.maimages
differential gene expression
limma
read.maimages
updated 9.0 years ago by
Gordon Smyth
50k • written 9.0 years ago by
SSK
▴ 10
2
votes
2
replies
1.3k
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AgilentG4502A_07_2 and AgilentG4502A_07_1
limma
read.maimages
normalization
preprocessing
updated 6.4 years ago by
Gordon Smyth
50k • written 6.4 years ago by
marviedemit
▴ 10
0
votes
1
reply
802
views
read.maimages: median intensities instead of mean
limma
read.maimages
updated 6.6 years ago by
Gordon Smyth
50k • written 17.4 years ago by
Lakshmanan Iyer
▴ 250
4 results • Page
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Comment: Deseq2 and Normalization of RNA sequencing data
by
kcarey
• 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP
by
Gordon Smyth
50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma
by
Gordon Smyth
50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Gordon Smyth
50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
In that case both time and treatment are identical things, so choose one and go with it.
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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