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Recount3 error downloading data
recount3
recount
12 weeks ago
Max Bone
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1
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Transcript level expression for CCLE
recount3
recount
CCLE
updated 3 months ago by
Leonardo Collado Torres
★ 1.0k • written 3 months ago by
António Miguel de Jesus Domingues
▴ 510
2
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474
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Zero counts for all samples for all genes downloaded from recount3
recount
updated 9 months ago by
ATpoint
★ 4.1k • written 9 months ago by
urwah
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Recount3 data download problem
recount
recount3
updated 12 months ago by
Leonardo Collado Torres
★ 1.0k • written 17 months ago by
franceschini.gianmarco
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6
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1.3k
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Unable to load data from duffel.rail
recount
recountWorkflow
recount3
updated 12 months ago by
Leonardo Collado Torres
★ 1.0k • written 17 months ago by
Max Bone
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0
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2
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694
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Cannot download data from IDIES links
recount
recountWorkflow
recount3
updated 12 months ago by
Leonardo Collado Torres
★ 1.0k • written 16 months ago by
dml
• 0
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Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank"
by
swbarnes2
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Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
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50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
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It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
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Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
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