Bioconductor Relevel

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deseq2 lfcshrink relevel

updated 8.2 years ago by Michael Love 43k • written 8.2 years ago by mat.lesche ▴ 110

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junctionseq relevel reference

8.9 years ago Assa Yeroslaviz ★ 1.5k

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junctionseq qorts multiple factor design relevel

8.9 years ago Assa Yeroslaviz ★ 1.5k

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deseq2 relevel resultsNames multifactorial design

updated 9.9 years ago by Michael Love 43k • written 9.9 years ago by rclaire ▴ 20

4 results • Page 1 of 1

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Answer: Clarification on counting in Rsubread (featureCounts) by Frances Turner • 0

You should look at the summary files produced by feature counts. This gives a breakdown of what happened to reads that were not assigned. Y…

Comment: Incosistencies in buildSNNGraph() function by ATpoint ★ 5.0k

Just played with this a bit and I think it comes down to not having a fixed seed before running the leiden thingy. Same goes for PCA and UM…

Answer: Incosistencies in buildSNNGraph() function by Aaron Lun ★ 29k

The most obvious thing that comes to mind is the RNG seed. `cluster_leiden()` does some random number generation, somewhere deep in the **i…

Comment: Opportunity to host EuroBioC2026 Preconference workshops! by TikTsokaas33ocissalpc • 0

Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…

Comment: Ensembl plants at annotationHub? by jwp48 • 0

Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!

Votes

A: Conversion from counts to FPKM

Answer: Incosistencies in buildSNNGraph() function

Answer: Where do the filename come from in the LOLA datasets?

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A: What is logFC and "B" in methylation analysis ??

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