Bioconductor Relevel

Showing : relevel • reset

5

votes

19

replies

7.2k

views

deseq2 lfcshrink relevel

updated 8.0 years ago by Michael Love 43k • written 8.0 years ago by mat.lesche ▴ 110

0

votes

0

replies

1.1k

views

junctionseq relevel reference

8.7 years ago Assa Yeroslaviz ★ 1.5k

1

vote

0

replies

1.3k

views

junctionseq qorts multiple factor design relevel

8.7 years ago Assa Yeroslaviz ★ 1.5k

0

votes

1

reply

3.5k

views

deseq2 relevel resultsNames multifactorial design

updated 9.7 years ago by Michael Love 43k • written 9.7 years ago by rclaire ▴ 20

4 results • Page 1 of 1

Recent ...

Replies

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

Votes

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

A: Multi-level experiments in Limma

Awards • All