Bioconductor Junctionseq

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1.4k

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DEXSeq JunctionSeq RNAseq QoRTs

3.8 years ago • updated 3.7 years ago n.tear ▴ 20

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988

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junctionseq splicing RNAseq DEXSeq

5.0 years ago stuart ▴ 10

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934

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JunctionSeq

7.6 years ago rachelrodgers12 • 0

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948

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junctionseq relevel reference

7.8 years ago Assa Yeroslaviz ★ 1.5k

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1.1k

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junctionseq qorts multiple factor design relevel

7.8 years ago Assa Yeroslaviz ★ 1.5k

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1.5k

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deseq2 junctionseq dexseq estimatedispersions rnaseq

updated 8.0 years ago by Steve Lianoglou ★ 13k • written 8.0 years ago by l.frank • 0

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933

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junctionseq

8.0 years ago jbono ▴ 10

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976

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junctionseq design and contrast matrix

8.1 years ago stuart • 0

8 results • Page 1 of 1

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Comment: Open Sesame: in what genes are my differentially methylated probes!! by alyssa-daniel • 0

@zhouwanding I have a question regarding DML analysis. I understand the Est_ output is describing the difference in methylation between the…

Comment: DESeq2 dispersion estimates fitting drastically different based on explanatory v by Sam • 0

Here is the explanatory variables![enter image description here][1] uses if that helps address the problem as well [1]: /media/images/…

Comment: Merge Replicates vs Mixed Model by abadgerw • 0

Thanks, @gabrielhoffman My understanding is that both options would still be mixed models: Even with technical replicates (3 wells per d…

Comment: Differential Expression Genes as Independent Variables by Dario Strbenac ★ 1.5k

Also, the reason why gene abundance is the dependent variable and is iterated over is that there are far more genes than there are samples …

Comment: rrvgo::calculateSimMatrix() error by Phila • 0

Thanks for sharing the solution. It helps me. [nced cloud][1] [1]: https://my-ncedcloud-login.us/

Votes

Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

Transcript-level differential expression using DESeq2

Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

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Popular Question to joseph.joonsang • 0

Popular Question to Hans-Ulrich Klein ▴ 330