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Showing :
junctionseq
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2
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517
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Question: Error when running QoRTs for JunctionSeq
DEXSeq
JunctionSeq
RNAseq
QoRTs
18 months ago • updated 17 months ago
n.tear
▴ 20
0
votes
1
reply
381
views
JunctionSeq producing strangely large effect sizes for certain exon counting bins
junctionseq
splicing
RNAseq
DEXSeq
2.7 years ago
stuart
▴ 10
0
votes
1
reply
556
views
JunctionSeq Can't produce Summary Plots
JunctionSeq
5.3 years ago
rachelrodgers12
• 0
0
votes
0
replies
578
views
Setting relevel with the JunctionSeq package
junctionseq
relevel
reference
5.5 years ago
Assa Yeroslaviz
★ 1.5k
1
vote
0
replies
652
views
JunctionSeq on multiple conditions
junctionseq
qorts
multiple factor design
relevel
5.5 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
1
reply
1.0k
views
JunctionSeq/DEXSeq: Dispersion plot looks strange (but is fine in DESeq2)
deseq2
junctionseq
dexseq
estimatedispersions
rnaseq
updated 5.7 years ago by
Steve Lianoglou
13k • written 5.7 years ago by
l.frank
• 0
0
votes
0
replies
593
views
Problems running JunctionSeq
junctionseq
5.7 years ago
jbono
▴ 10
0
votes
0
replies
523
views
JunctionSeq pairwise contrast with a multi-level treatment
junctionseq
design and contrast matrix
5.8 years ago
stuart
• 0
8 results • Page
1 of 1
Recent ...
Replies
Comment: Retrieve gene summary start/end in biomart query
by
rbenel
▴ 20
Hi Mike, I have tried the query without the transcript, and I believe there are cases where I will receive unique transcript start/end si…
Comment: MMDiff2 memory issues
by
e.iich
• 0
running against a similar issue. Have you found any solutions?
Answer: mapToAlignments_issue
by
Hervé Pagès
15k
> I would expect in case of reverse alignment lifted ranges to correspond to position 91-100 of the query sequence. Nope. Local coordinate…
Answer: Problem related to `biomaRt::getBM()` during `R CMD check` execution
by
James W. MacDonald
60k
Does the section in the biomaRt vignette that talks about caching (and using a temp dir) help?
Comment: OPLS-DA: confidence interval for accuracy metric
by
Eddie
• 0
Worked well under pROC. Thank you
Votes
A: EGSEA error during report generation: "only 0's may be mixed with negative subsc
Answer: mapToAlignments_issue
Analysis of peaks generated from Homer using Diffbind
How to select summit size for histone ChiP-Seq in Diffbind
Comment: GSEA with Wikipathways not entirely reproducible
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Gordon Smyth
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gv
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Hervé Pagès
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ta_awwad
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