Biostar Junctionseq

Showing : junctionseq • reset

votes

replies

247

views

DEXSeq JunctionSeq RNAseq QoRTs

7 months ago • updated 6 months ago n.tear ▴ 10

votes

226

views

junctionseq splicing RNAseq DEXSeq

21 months ago stuart ▴ 10

votes

440

views

JunctionSeq

4.4 years ago rachelrodgers12 • 0

votes

replies

475

views

junctionseq relevel reference

4.6 years ago Assa Yeroslaviz ★ 1.5k

vote

replies

555

views

junctionseq qorts multiple factor design relevel

4.6 years ago Assa Yeroslaviz ★ 1.5k

votes

870

views

deseq2 junctionseq dexseq estimatedispersions rnaseq

updated 4.8 years ago by Steve Lianoglou 13k • written 4.8 years ago by l.frank • 0

votes

replies

503

views

junctionseq

4.8 years ago jbono ▴ 10

votes

replies

441

views

junctionseq design and contrast matrix

4.9 years ago stuart • 0

8 results • Page 1 of 1

Recent ...

Replies

Comment: Volcano plots of DEGs from Swish are weird by Qin ▴ 10

Thans for your reply. I'm sorry for reply so late, because I didn't getting any messages in my email. I will read details of the vignette.

Comment: At least one covariate is confounded with batch! Please remove confounded covari by NewBioInfo • 0

Thank you, James. I was indeed using the wrong matrix. The `nonExtimable` did give me the column name which was causing the issue but I do …

Comment: Returning to edgeR version 3.26.1? by Gordon Smyth 43k

I don't think that any changes to edgeR between 3.26.1 and 3.26.8 could have caused the changes that you show.

Comment: Returning to edgeR version 3.26.1? by mvanhorn • 0

Thank you very much for your reply! Our project is a reanalysis of large sets of RNA-seq data to identify circular RNAs using the CIRIquan…

Comment: "full model matrix is less than full rank" by ATpoint ▴ 840

My best guess is that young and old are not "young" or "old" but include some hidden whitespaces like " young" or "old ". That would then m…

Votes

simultaneous use of robust and weighting methods in limma

Answer: Swish direction of comparison based on order of factors

Comment: Gradient dotplot

Answer: EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on indi

Awards • All

Scholar to Gordon Smyth 43k

Popular Question to Dario Strbenac ★ 1.5k

Popular Question to Hans-Ulrich Klein ▴ 330