Bioconductor Junctionseq

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916

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DEXSeq JunctionSeq RNAseq QoRTs

2.6 years ago • updated 2.5 years ago n.tear ▴ 20

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664

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junctionseq splicing RNAseq DEXSeq

3.8 years ago stuart ▴ 10

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724

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JunctionSeq

6.4 years ago rachelrodgers12 • 0

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702

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junctionseq relevel reference

6.6 years ago Assa Yeroslaviz ★ 1.5k

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810

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junctionseq qorts multiple factor design relevel

6.6 years ago Assa Yeroslaviz ★ 1.5k

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1.2k

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deseq2 junctionseq dexseq estimatedispersions rnaseq

updated 6.8 years ago by Steve Lianoglou 13k • written 6.8 years ago by l.frank • 0

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724

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junctionseq

6.8 years ago jbono ▴ 10

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687

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junctionseq design and contrast matrix

6.9 years ago stuart • 0

8 results • Page 1 of 1

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Comment: DMRcate design by James W. MacDonald 63k

That's what identical context means.

Comment: DMRcate design by Jitendra ▴ 10

Thanks James, but I did not understand it clearly. Could I used same Limma design matrix for DMRcate?

Comment: Steps needed to change design (relevel factors) in DESeq2 by jd774 • 0

Thanks for the example code, would the `"condition_1_vs_2"` and `"condition_2_vs_1"` giving same or different results on DEGs and normalize…

Answer: heatmap.2 - change column & row locations; angle / rotate by nehagoyal6397 • 0

Window 10 are comes with the new updates [how to fix connections to wireless displays in windows 10](http://fixwindows10connections.com) ju…

Comment: filtering out lowly expressed genes by groups by James W. MacDonald 63k

You might want to filter first though. ``` fun <- function(deseqobj, contvec, cutoff) { lildds <- dds[rowMeans(assays(deseqobj…