Biostar Junctionseq

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517

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DEXSeq JunctionSeq RNAseq QoRTs

18 months ago • updated 17 months ago n.tear ▴ 20

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381

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junctionseq splicing RNAseq DEXSeq

2.7 years ago stuart ▴ 10

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556

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JunctionSeq

5.3 years ago rachelrodgers12 • 0

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578

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junctionseq relevel reference

5.5 years ago Assa Yeroslaviz ★ 1.5k

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652

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junctionseq qorts multiple factor design relevel

5.5 years ago Assa Yeroslaviz ★ 1.5k

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1.0k

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deseq2 junctionseq dexseq estimatedispersions rnaseq

updated 5.7 years ago by Steve Lianoglou 13k • written 5.7 years ago by l.frank • 0

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593

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junctionseq

5.7 years ago jbono ▴ 10

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523

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junctionseq design and contrast matrix

5.8 years ago stuart • 0

8 results • Page 1 of 1

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Comment: Retrieve gene summary start/end in biomart query by rbenel ▴ 20

Hi Mike, I have tried the query without the transcript, and I believe there are cases where I will receive unique transcript start/end si…

Comment: MMDiff2 memory issues by e.iich • 0

running against a similar issue. Have you found any solutions?

Answer: mapToAlignments_issue by Hervé Pagès 15k

> I would expect in case of reverse alignment lifted ranges to correspond to position 91-100 of the query sequence. Nope. Local coordinate…

Answer: Problem related to `biomaRt::getBM()` during `R CMD check` execution by James W. MacDonald 60k

Does the section in the biomaRt vignette that talks about caching (and using a temp dir) help?

Comment: OPLS-DA: confidence interval for accuracy metric by Eddie • 0

Worked well under pROC. Thank you

Votes

A: EGSEA error during report generation: "only 0's may be mixed with negative subsc

Answer: mapToAlignments_issue

Analysis of peaks generated from Homer using Diffbind

How to select summit size for histone ChiP-Seq in Diffbind

Comment: GSEA with Wikipathways not entirely reproducible

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