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Showing :
resultsNames
•
reset
1
vote
7
replies
9.0k
views
DESeq2 resultsNames(dds) not giving the right comparisons?.
deseq2
DESeq2
resultsNames
6.8 years ago
davichen
▴ 10
2
votes
4
replies
4.0k
views
DESeq results names when using interaction terms
DESeq
deseq2
resultsnames
7.9 years ago • updated 7.8 years ago
akaever
▴ 30
0
votes
4
replies
3.3k
views
DESeq2 extracting results: resultsNames does not show the expected output
deseq2
rnaseq
resultsnames
7.0 years ago
zeynep.nenseth
• 0
0
votes
1
reply
2.9k
views
DESeq2 releveling not changing resultsNames options
deseq2
relevel
resultsNames
multifactorial design
updated 8.2 years ago by
Michael Love
42k • written 8.2 years ago by
rclaire
▴ 20
4
votes
4
replies
2.1k
views
How to handle the change in resultsNames() for DESeq2 ?
deseq2
resultsnames
multifactorial design
updated 7.9 years ago by
Michael Love
42k • written 8.0 years ago by
Ira
▴ 10
0
votes
8
replies
1.8k
views
DESeq2 coefficient names
resultsNames
DESeq2
coefficient
3.0 years ago
Jane
▴ 10
0
votes
1
reply
1.2k
views
resultnames(dds) not giving correct output
deseq2
resultsnames
updated 6.8 years ago by
Michael Love
42k • written 6.8 years ago by
mrigaya.mehra
▴ 10
0
votes
2
replies
1.1k
views
Discrepancy in extracting contrasts
deseq2
resultsnames
batch effect
contrast
updated 6.6 years ago by
Michael Love
42k • written 6.6 years ago by
pkachroo
▴ 10
1
vote
3
replies
1.0k
views
resultsNames(dds) not showing all contrasts
DESeq2
resultsNames
lfcShrink
updated 20 months ago by
ATpoint
★ 4.1k • written 20 months ago by
eve.olszanowski
• 0
0
votes
3
replies
913
views
Pairwise comparisons for "both between and within subject"experiment using DESeq2
pairwise
deseq2
extracting contrasts
resultsnames
results deseq2
updated 5.5 years ago by
Michael Love
42k • written 5.5 years ago by
Ricardo Rodrigues
• 0
0
votes
5
replies
708
views
Unexpected results
resultsNames
DESeq2
written 3.3 years ago by
efratsh
▴ 10
11 results • Page
1 of 1
Recent ...
Replies
Comment: deseq2 results
by
sajadahmad41454
• 0
could you please tell me if the results are fine or not? ![pca summary][1] ![pca plot][2] [1]: /media/images/ee7d8693-bcbe-4a7a-a566-d3…
Answer: normalization using Deseq2
by
ATpoint
★ 4.1k
counts(dds, normalized=TRUE)
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Hi Michael, I have tried what you suggested. I started with methylation loci. I created segment1 and segment2 but how to combine them bec…
Comment: EGSEA usage with microarray data (with vooma)?
by
Chris
• 0
Hi Pekka, I also try EGSEA with microarray data. However, I got this error. Would you please have a suggestion? gsa = egsea.ma(numeric…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
> Any suggestions for methylation data segmentation? I think the same segmentation can be used.
Votes
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Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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