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georgii.vdovin
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Michael Love
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georgii.vdovin
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written 11 months ago by
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Ndimensional
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190
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GM
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sp
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Deseq2: How to adjust for baseline read counts when testing for groups differences at post-treatment
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Nick
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canfield
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written 4.3 years ago by
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Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
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0
I ran the debugger and this is the line that causes the error:
```
if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
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0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
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Guido Hooiveld
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4.0k
FYI (since I just finalized a run with `salmon`).
For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
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Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
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