Bioconductor Resultsnames

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deseq2 DESeq2 resultsNames

6.8 years ago davichen ▴ 10

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DESeq deseq2 resultsnames

7.8 years ago akaever ▴ 30

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deseq2 rnaseq resultsnames

7.0 years ago zeynep.nenseth • 0

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2.9k

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deseq2 relevel resultsNames multifactorial design

updated 8.2 years ago by Michael Love 41k • written 8.2 years ago by rclaire ▴ 20

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2.0k

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deseq2 resultsnames multifactorial design

updated 7.9 years ago by Michael Love 41k • written 7.9 years ago by Ira ▴ 10

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1.8k

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resultsNames DESeq2 coefficient

3.0 years ago Jane ▴ 10

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1.2k

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deseq2 resultsnames

updated 6.8 years ago by Michael Love 41k • written 6.8 years ago by mrigaya.mehra ▴ 10

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1.1k

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deseq2 resultsnames batch effect contrast

updated 6.6 years ago by Michael Love 41k • written 6.6 years ago by pkachroo ▴ 10

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994

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DESeq2 resultsNames lfcShrink

updated 20 months ago by ATpoint ★ 4.0k • written 20 months ago by eve.olszanowski • 0

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907

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pairwise deseq2 extracting contrasts resultsnames results deseq2

updated 5.4 years ago by Michael Love 41k • written 5.4 years ago by Ricardo Rodrigues • 0

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701

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resultsNames DESeq2

written 3.3 years ago by efratsh ▴ 10

11 results • Page 1 of 1

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Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0

Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…

Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

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Answer: Dominance Index for Shotgun Metagenomics Data

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

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