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rhdf5lib
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815
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Error in H5Fopen
rhdf5
Rhdf5lib
kallisto
tximport
12 months ago
Yijing
• 0
1
vote
13
replies
6.1k
views
Compilation fatal error: iostream.h: No such file or directory when installing Rhdf5lib package
rhdf5
Rhdf5lib
2.7 years ago
charlotte
▴ 10
0
votes
2
replies
1.1k
views
Permission denied when manually installing R packages(Rhdf5lib)
rhdf5
rhdf5filters
Rhdf5lib
2.7 years ago
charlotte
▴ 10
1
vote
1
reply
1.2k
views
Error in download.file while installing rhdf5lib
rhdf5
rhdf5filters
Rhdf5lib
2.7 years ago
charlotte
▴ 10
2
votes
8
replies
2.4k
views
Reading HDF5 Files In The Cloud
Rhdf5lib
rhdf5
3.2 years ago • updated 8 months ago
Thomas Sandmann
▴ 90
0
votes
9
replies
2.7k
views
Rhdf5lib installation problem
minfi
Rhdf5lib
updated 3.3 years ago by
Mike Smith
★ 6.5k • written 3.3 years ago by
Giovanni Calice
▴ 160
3
votes
4
replies
1.9k
views
Rhdf5lib Installation Problem - cp: cannot stat 'hdf5/c++/src/.libs/libhdf5_cpp.a'
software error
Rhdf5lib
5.0 years ago
z.navidi90
▴ 10
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Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
camp
▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123
by
Gordon Smyth
50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
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Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
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