Bioconductor Ripseeker

Showing : ripseeker • reset

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2.9k

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biomart ensembl ripseeker

updated 6.5 years ago by Mike Smith ★ 6.5k • written 6.5 years ago by António Miguel de Jesus Domingues ▴ 510

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2.3k

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RIPSeeker biomart

8.4 years ago • updated 8.3 years ago xfwang ▴ 20

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2.7k

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biomaRt RIPSeeker biomaRt RIPSeeker

updated 10.8 years ago by António Miguel de Jesus Domingues ▴ 510 • written 10.8 years ago by Nicola Cole ▴ 30

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1.5k

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ripseeker

8.3 years ago • updated 8.0 years ago xfwang ▴ 20

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1.2k

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Annotation GO RIPSeeker Annotation GO RIPSeeker

updated 10.8 years ago by Dan Tenenbaum ★ 8.2k • written 10.8 years ago by Davis, Wade ▴ 350

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1.2k

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RipSeeker RIp-seq

updated 2.4 years ago by James W. MacDonald 66k • written 2.4 years ago by GiV17 • 0

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1.1k

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RIPseeker RIP rna-seq

7.2 years ago ofonov ▴ 10

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712

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RIP ripseek ripseeker

6.4 years ago jarod_v6@libero.it ▴ 40

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736

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ripseeker AgoIP RIPSeek

6.4 years ago ximena.garate • 0

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618

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ripseeker

6.0 years ago fitzgeraldd424 • 0

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840

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ripseeker

7.8 years ago snamjoshi87 ▴ 40

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1.3k

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GO biomaRt RIPSeeker GO biomaRt RIPSeeker

10.8 years ago Davis, Wade ▴ 350

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889

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RIPSeeker RIPSeeker

10.6 years ago Davis, Wade ▴ 350

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2.3k

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GAlignmentPairs galp2gal RIPSeeker

9.2 years ago tomas.bjorklund ▴ 20

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1.3k

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RIPSeeker RIPSeeker

11.0 years ago Endre Sebestyen ▴ 10

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1.5k

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RIPSeeker ripSeek RIP

7.2 years ago ofonov ▴ 10

16 results • Page 1 of 1

Recent ...

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Comment: Cannot install oligo on Fedora by James W. MacDonald 66k

I think the solution is for the C code in `oligo` to be updated to work with more modern versions of `zlib`. The `zlibbioc` package is real…

Comment: Error in gseDO function by Guido Hooiveld ★ 4.0k

I don't fully understand what you are asking... Yet, in my opinion it doesn't make sense to use the results of only 12 genes for ORA (nor G…

Comment: Counter-directional LFC shrinkage by ATpoint ★ 4.2k

Is this RNA-seq? The unshrunken MA-plot looks very odd and indicates that normalization is completely offset.

Answer: ChAMP not available for bioconductor 3.19 by shepherl 3.9k

See https://support.bioconductor.org/p/9158324/#9158336 . We have reached out to goseq to fix the package; we have a community member …

Answer: Counter-directional LFC shrinkage by Michael Love 42k

It's not just the average count but also the dispersion that affects apeglm. You can try ashr for another type of shrinkage.

Votes

A: DESeq2: add annotations (from data frame) to DESeqDataSet

Answer: Error in gseDO function

Comment: what the test method for enrichGO in clusterProfiler?

A: Comparison between two different group's pathway analysis results

DiffBind Batch Effect

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