Showing : rnaseq analysis • reset
6
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Time course analysis in DESeq2: handling common baseline for two experimental conditions
deseq2 timecourse multiple factor design RNAseq analysis differential gene expression
updated 5.5 years ago by ▴ 660 • written 5.5 years ago by ▴ 50
6
votes
14
replies
2.2k
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Robust transformation of raw RNA-seq counts for exploratory data analysis and hierarchical clustering
rnaseq analysis variancestabilizingtransformation normalization cpm edger
updated 4.9 years ago by 13k • written 4.9 years ago by ▴ 810
0
votes
4
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440
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RNA seq data
rnaseq analysis
updated 4.2 years ago by 62k • written 4.2 years ago by • 0
0
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3
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1.1k
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edgeR: "no non-missing arguments to min; returning Inf" after filterByExpression
filterByExpression edgeR RNAseq analysis edger
updated 3.0 years ago by 47k • written 3.0 years ago by • 0
1
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2
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1.1k
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RNA-seq read alignment best practices for low-input samples
limma differential gene expression rnaseq analysis alignment RSEM
updated 5.3 years ago by ★ 28k • written 5.3 years ago by ▴ 10
5 results • Page 1 of 1
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Answer: Correct script for featurecounts in Rsubread by Gordon Smyth 47k
See - https://bioconductor.org/packages/release/workflows/vignettes/RnaSeqGeneEdgeRQL/inst/doc/edgeRQL.html#quantifying-read-counts-for-eac…
Comment: Time-course, comparison of two groups by boczniak767 ▴ 720
Thank you very much @gordon-smyth ! I'm very happy that my test for interaction is okay. So I'll try to extend my test experiment to three …
Answer: Handling limma usage after running multiple imputation on the covariates with mi by Gordon Smyth 47k
limma is not designed to be used with multiply imputed covariates, so I can't offer a solution that uses the multiple imputes. Averaging t…
Answer: Correct script for featurecounts in Rsubread by James W. MacDonald 62k
Here's the relevant section from `?featureCounts` ``` Value: A list with the following components: counts: a data matrix c…
Comment: Can I run DESeq2 with SMART-Seq data by Assa Yeroslaviz ★ 1.5k
thanks, the filter is the other way around, true 🙈
Votes
A: gene dispersion, what does it mean?
Answer: gene dispersion, what does it mean?
Limma time series spline help
Answer: Correct script for featurecounts in Rsubread
Comment: Time-course, comparison of two groups
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