Bioconductor Rnaseqgene

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597

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DifferentialExpression rnaseqGene RNASeqData

3 months ago Shaimaa Gamal • 0

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668

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DESeq2 rnaseqGene RNASeqData limma RNASeq

updated 10 weeks ago by Michael Love 42k • written 12 weeks ago by sap275 ▴ 10

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233

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DESeq2 rnaseqGene DifferentialExpression

updated 3 months ago by Michael Love 42k • written 3 months ago by Abhishek Singh ▴ 20

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839

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rnaseqGene DESeq2 Transcriptomics

2.6 years ago • updated 12 months ago diangomaiga • 0

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363

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DESeq2 DifferentialExpression rnaseqGene DifferentialRegulation

9 days ago • updated 6 days ago sajadahmad41454 • 0

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585

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rnaseqGene Bioconductor3.18 DifferentialExpression release

updated 6 months ago by Michael Love 42k • written 6 months ago by Nadine ▴ 60

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836

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rnaseqGene

updated 10 months ago by Michael Love 42k • written 10 months ago by ikpa_p123 • 0

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DESeq2 rnaseqGene Normalization

updated 8 days ago by ATpoint ★ 4.1k • written 8 days ago by sajadahmad41454 • 0

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305

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rnaseqGene edgeR DEGraph DifferentialExpression

updated 9 weeks ago by Gordon Smyth 50k • written 9 weeks ago by z_bahari • 0

9 results • Page 1 of 1

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Comment: Numerical differences in DESeq2 output depending on different design matrix cons by JKim • 0

The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.

Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…

Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80

ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …

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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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