Showing : romer • reset
1
vote
1
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998
views
"Mixed" in romer output
limma romer
updated 7.7 years ago by 68k • written 7.7 years ago by ▴ 10
0
votes
2
replies
1.9k
views
using camera/roast/romer to find enriched gene sets from proteomics data
limma proteomics camera mroast romer
updated 9.1 years ago by 53k • written 9.1 years ago by • 0
8
votes
4
replies
7.1k
views
Differences between edgeR's and limma+voom's implementation of camera/roast/romer
limma edger mroast romer camera
updated 9.8 years ago by ★ 13k • written 9.8 years ago by ▴ 180
2
votes
1
reply
1.7k
views
limma symbols2indices from gmt files versus rdata files
limma romer roast
updated 9.8 years ago by 53k • written 9.8 years ago by ▴ 10
3
votes
3
replies
8.9k
views
Gene Set Enrichment Analysis with Limma
limma romer gene set analysis
updated 10.0 years ago by 53k • written 10.0 years ago by ▴ 40
7
votes
9
replies
3.6k
views
limma's mroast and romer
romer mroast limma
updated 10.1 years ago by 53k • written 10.1 years ago by ▴ 10
1
vote
2
replies
1.8k
views
Update to MSigDB derivates for romer()?
limma romer msigdb
updated 10.2 years ago by 68k • written 10.2 years ago by ▴ 40
5
votes
2
replies
2.6k
views
Using limma::roast/camera/romer etc from DESeq2
deseq2 edger limma romer camera
updated 10.2 years ago by 53k • written 10.2 years ago by ▴ 150
19
votes
10
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5.2k
views
Do the outputs of Limma's competitive gene set methods (camera, romer) require a mutliple testing correction?
limma romer
updated 10.2 years ago by 53k • written 10.2 years ago by ▴ 40
9 results • Page 1 of 1
Recent ...
Replies
Answer: Add additional maintainer for MOFA2 by shepherl 4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Answer: gene Set with high AUC score but no cells assigned to cell type by Kevin Blighe ★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Answer: featureCounts -L: high unassigned:mapq fraction by Kevin Blighe ★ 4.0k
Hi Katarzyna, The discrepancy arises because your samtools stats were restricted to genic regions only, where alignments are typically o…
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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