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limma romer

updated 9.4 years ago by Gordon Smyth 52k • written 9.4 years ago by Jon Manning ▴ 40

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limma edger mroast romer camera

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romer mroast limma

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deseq2 edger limma romer camera

updated 9.4 years ago by Gordon Smyth 52k • written 9.4 years ago by phil.chapman ▴ 150

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limma romer gene set analysis

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limma romer roast

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limma romer msigdb

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limma romer

updated 6.9 years ago by James W. MacDonald 67k • written 6.9 years ago by johnmcma ▴ 10

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limma proteomics camera mroast romer

updated 8.3 years ago by Gordon Smyth 52k • written 8.3 years ago by natalia.pietrosemoli • 0

9 results • Page 1 of 1

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Comment: Why did PCA plots look exactly the same after adjusting for batch covariate in D by Michael Love 43k

hi, for questions about what statistical analysis approach to use, I recommend you work with a local statistician or someone familiar with …

Comment: Problems with oarfish + tximport + swish by Michael Love 43k

I'm not certain that this will work with Oarfish, the documentation only mentions Salmon and piscem. I'd use tximport for now.

Answer: Problems with oarfish + tximport + swish by Michael Love 43k

> This is fine Did tximeta() print that a matching transcriptome was found?

Answer: DESeq2 Heatmap by swbarnes2 ★ 1.4k

> However, I've been asked why the first column (vehicle/control) isn't > entirely zero on the log fold change (logFC) expression scale. …

Comment: Biomart and ensembl not working? by James W. MacDonald 67k

``` > library(biomaRt) > mart <- useEnsembl("ensembl","hsapiens_gene_ensembl") Ensembl site unresponsive, trying useast mirror > mart Objec…

Votes

Answer: Limma Interaction Effect with Covariates

Comment: DESeq2 for single cell pseudobulk processing

C: Limma: how to get same output as topTable but for all the genes ?

A: Processing agilent data by limma

A: Linear regression in DESeq2

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Popular Question to Assa Yeroslaviz ★ 1.5k

Popular Question to xiaofeiwang18266 ▴ 50