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Answer: Deseq2 res Function
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Michael Love
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> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively?
Read over the vignette and work…
Answer: ANOVA like approach of edgeR
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Gordon Smyth
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You need to clarify whether interactions are present for the two factors in your study.
In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data
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Gordon Smyth
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GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix?
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James W. MacDonald
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You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
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