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Installation of samr package on R v3.4 mac OS Sierra
samr
updated 7.5 years ago by ▴ 50 • written 7.5 years ago by • 0
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SAM r for finding up and down regulated genes
samr
updated 8.8 years ago by ★ 6.8k • written 8.8 years ago by ▴ 10
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samr: understanding scoring line not parallel to diagonal; reproduce example C
samr
9.3 years ago SamGG ▴ 350
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How to modify function of samr.estimate.depth of samr
samr
updated 9.4 years ago by 67k • written 9.4 years ago by ▴ 10
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Interprentation of appropriate statistical test
samr SAM siggenes bioconductor differential gene expression
9.8 years ago svlachavas ▴ 830
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How to use SamR
samr rnaseq CRAN
updated 10.1 years ago by 25k • written 10.1 years ago by ▴ 40
6 results • Page 1 of 1
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Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di by James W. MacDonald 67k
The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…
Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k
Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…
Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0
Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k
You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…
Answer: HilBertVis install error by James W. MacDonald 67k
It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…
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A: TopGO: How to retrieve the gene list related to a GO ID ?
A: Error in DESeqDataSet : some values in assay are not integers
A: correcting the batch effects in Limma and SVA
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
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