Bioconductor Sashimi

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Coverage Gviz sashimi

updated 4 days ago by macdonaldfrench7286566 • 0 • written 7 months ago by Marco • 0

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1.1k

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gviz sashimi

updated 5.7 years ago by Robert Ivanek ▴ 750 • written 5.7 years ago by willbradshaw • 0

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1.6k

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Gviz Sashimi

6.0 years ago benjamin.carter • 0

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2.5k

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Gviz sashimi sashimi plots read counting bam

updated 8.2 years ago by Robert Ivanek ▴ 750 • written 8.2 years ago by bernt.popp • 0

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1.3k

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gviz intropolis junction sashimi

updated 8.7 years ago by florian.hahne@novartis.com ★ 1.6k • written 8.7 years ago by bernt.popp • 0

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Comment: Check removeBatchEffect effectiveness by massimo • 0

Yes, I still get the warning, so there is confounding apparently. However, the resulting adjusted matrix is quite different than before and…

Answer: Limma trend with limpa by Gordon Smyth 52k

Dear Alejandro, Thanks for your interest. No, one does not set `trend=TRUE` when running eBayes() after dpcDE(). The variance trends are …

Comment: Check removeBatchEffect effectiveness by Gordon Smyth 52k

Both of your matrices, `design_batcheffects` and `design_timepoint`, span the intercept term, which will cause a warning about NA coefficie…

Comment: DiffBind - question on the use of filtered or unfiltered input data by sloperun3az • 0

Your essay was beneficial to me, and I found it to be very useful. Thank you for writing it. You give a wealth of knowledge that is not onl…

Comment: compute_fasta_digest does not match Salmon index hash by sloperun3az • 0

The people who are reading your work are not taken into consideration, even though you appear to have a solid understanding of the subject …

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Comment: Check removeBatchEffect effectiveness

Answer: Check removeBatchEffect effectiveness

Comment: parameters of filterByExpr

GAlignments Cigar to GRanges

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