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scran
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178
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Reproducibility issue with scran together with lapply and BiocParallel
scran
BiocParallel
bluster
27 days ago • updated 26 days ago
ATpoint
★ 4.1k
2
votes
1
reply
256
views
Existence of Bioconductor versus Seurat Software Ecosystems Quantitative Comparison
scran
bluster
scater
scuttle
updated 8 weeks ago by
ATpoint
★ 4.1k • written 8 weeks ago by
Dario Strbenac
★ 1.5k
0
votes
3
replies
480
views
scran package: quickCluster and calculateSumFactors parallelization
BiocParallel
scran
updated 4 months ago by
ATpoint
★ 4.1k • written 4 months ago by
qwang178
• 0
1
vote
2
replies
919
views
ScRNAseq analysis scran :: quickcluster Error
scRNAseq
quickcluster
scRNA
scran
5 months ago
ruba-mahmoud
• 0
0
votes
1
reply
390
views
Speeding up large scale scRNAseq analyses in R and improve memory
scran
updated 8 months ago by
ATpoint
★ 4.1k • written 8 months ago by
Maximilian
• 0
0
votes
2
replies
864
views
runPCA in a SingleCellExperiment results ina colMeans error
scran
SingleCellExperiment
11 months ago
Lluís Revilla Sancho
▴ 730
2
votes
2
replies
5.7k
views
scran ScoreMarkers throws a warning
scoreMarkers
scran
updated 11 months ago by
Peter Hickey
▴ 740 • written 11 months ago by
Assa Yeroslaviz
★ 1.5k
2
votes
3
replies
1.3k
views
P-value histogram of testLinearModel is not uniform
smart-seq2
scRNAseq
scran
11 months ago
Lluís Revilla Sancho
▴ 730
8 results • Page
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Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Thank you so much!
Answer: recount3 problem downloading data from source sra
by
Leonardo Collado Torres
★ 1.0k
Hi, I wasn't able to reproduce the issue on both bioc 3.19 (current release version) and 3.18 (closer to your session info). My guess is…
Answer: Running ENmix with mouse methylation manifest: readidat error - Error in readman
by
minardsmitha
▴ 10
Well it turns out there is a typo in the manifest file name. This particular issue is resolved by correcting the typo. A new error now …
Answer: Documenting resources in an `ExperimentHub` package?
by
James W. MacDonald
66k
The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…
Comment: ChAMP installation issue
by
shepherl
3.9k
We are still waiting for the goseq to respond to our requests but will take action next week if it is not resolved. ChAMP is currently una…
Votes
Comment: Ensembl plants at annotationHub?
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
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