Bioconductor Seqnames

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Seqnames makeGRangesFromDataFrame GRanges Subsetting GenomicRanges

4.4 years ago rtrivedi1 ▴ 10

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1.2k

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dnastringset dnastringsetlist seqnames

7.0 years ago s.ghignone ▴ 10

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1.4k

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seqnames genomeinfodb

updated 8.5 years ago by Hervé Pagès 16k • written 8.5 years ago by matt.chambers42 ▴ 10

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genomicranges seqnames factor

9.1 years ago wcstcyx ▴ 30

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software error seqnames characters r chipseq

9.5 years ago awakumaya • 0

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18k

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granges genomicranges sort seqnames order

updated 10.6 years ago by yinghua ▴ 30 • written 11.0 years ago by enricoferrero ▴ 680

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7.3k

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GRanges seqnames seqlengths IRanges

11.2 years ago • updated 11.1 years ago topher.hamm • 0

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Answer: mzR-Rcpp compiler version issue by Laurent Gatto 1.6k

There are two issues here. First, a warning about mzR, that you can safely ignore. It tells you that mzR was compiled using a different …

Comment: Identifying differentially expressed genes in individual samples from a large co by jamie.gearing ▴ 60

Great. Yes, something descriptive is probably good enough, even if the p-values themselves are not so rigorous. Thanks very much Gordon!

Comment: Co-occurrence Network Analysis between Algae and Bacteria by Stefano Mangiola ▴ 40

Just a placeholder, that we are extending `sccomp` to co-occurrence analyses. Yours could be a good use-case to test first. We will be in t…

Answer: DESeq2 design for haplotype MPRA by aimesd808 • 0

I appreciate you telling me about this. Now it's crystal plain to me. Publish this: https://support.bioconductor.org/p/9162649/

Answer: Must I do pseudobulk analysis on Cell Surface Protein Labeling data of Single C by Kevin Blighe ★ 4.0k

Hello Lei, The concept of pseudobulk analysis applies equally to cell surface protein data as it does to gene expression data in single-…

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Answer: Identifying differentially expressed genes in individual samples from a large co

Bioconductor Seminar Series - Dec 2: Deep-learning Gene Perturbation Effect Prediction

Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif

Comment: Error installing Seqinfo

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