Bioconductor SingleCellExperiment

Showing : singleCellExperiment • reset

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343

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BatchEffect SingleCellExperiment

updated 3 months ago by James W. MacDonald 65k • written 3 months ago by NeuroDaniel • 0

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170

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SingleCellExperiment

4 months ago JalapenoCornbread • 0

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593

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SingleCellExperiment

4 months ago • updated 3 months ago Dario Strbenac ★ 1.5k

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956

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SingleR SingleCellExperiment

5 months ago elgomez • 0

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519

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tidyverse R SingleCellExperiment SingleCellData

updated 5 months ago by daenerystargaryen56 • 0 • written 5 months ago by Sitapriya • 0

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521

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SingleCellExperiment

written 7 months ago by megan • 0

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881

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scRNAseq edgeR SingleCellExperiment

9 months ago duez.tolga • 0

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939

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singleR SingleCellExperiment SingleCellData

10 months ago Matvii Mykhailichenko • 0

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853

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scran SingleCellExperiment

11 months ago Lluís Revilla Sancho ▴ 730

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1.8k

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SingleCellExperiment

written 5.1 years ago by Matthew Thornton ▴ 360

10 results • Page 1 of 1

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Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…

Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80

ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …

Comment: STRINGdb : error with string_db$plot_network() by ninidea • 0

> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…

Votes

Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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