Bioconductor Singlecellexperiment

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593

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SingleCellExperiment

4 months ago • updated 3 months ago Dario Strbenac ★ 1.5k

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881

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scRNAseq edgeR SingleCellExperiment

9 months ago duez.tolga • 0

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1.8k

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SingleCellExperiment

written 5.1 years ago by Matthew Thornton ▴ 360

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517

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tidyverse R SingleCellExperiment SingleCellData

updated 5 months ago by daenerystargaryen56 • 0 • written 5 months ago by Sitapriya • 0

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937

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singleR SingleCellExperiment SingleCellData

10 months ago Matvii Mykhailichenko • 0

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851

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scran SingleCellExperiment

11 months ago • updated 10 months ago Lluís Revilla Sancho ▴ 730

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955

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SingleR SingleCellExperiment

5 months ago elgomez • 0

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521

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SingleCellExperiment

written 7 months ago by megan • 0

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342

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BatchEffect SingleCellExperiment

updated 3 months ago by James W. MacDonald 65k • written 3 months ago by NeuroDaniel • 0

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168

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SingleCellExperiment

3 months ago JalapenoCornbread • 0

10 results • Page 1 of 1

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Comment: Ensembl plants at annotationHub? by Daniele • 0

Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30

Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…

Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0

Thanks a lot!

Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150

Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by Matthew Thornton ▴ 360

So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!

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Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?

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