Bioconductor Singlecellworkflow

Showing : singlecellworkflow • reset

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156

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SingleCellExperiment SingleCell SingleCellWorkflow SingleCellData

3 months ago Ludwig Geistlinger ▴ 70

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single-cell SingleCell SingleCellExperiment SingleCellWorkflow SingleCellData

7 months ago • updated 6 months ago Konstantinos Yeles ▴ 90

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SingleCell SingleCellExperiment SingleCellWorkflow SingleCellData

updated 4 months ago by Partly • 0 • written 3.3 years ago by k1m ▴ 20

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1.7k

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SingleCell SingleCellData SingleCellWorkflow SingleCellExperiment

3.3 years ago Romina • 0

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SingleCellWorkflow DifferentialExpression SingleCell SingleCellMultiModal MAST

3.5 years ago Nik Tuzov ▴ 90

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SingleCellSignalR SingleCellWorkflow SingleR

updated 2.1 years ago by Assa Yeroslaviz ★ 1.5k • written 4.6 years ago by FantasticAI ▴ 10

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Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0

Thanks for the reply Gordon. I am also working on the project and have been tasked to reformulate and add some details. We're interested i…

Answer: How does contrasts.fit do in limma to extract comparisons with a model having in by Gordon Smyth 53k

The limma Users Guide explains how to test for interactions or to test for contrasts very easily. limma can work with any design matrix, bu…

Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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