Bioconductor Sort

Showing : sort • reset

votes

replies

1.7k

views

sort R RNAseq character numeric

updated 4.2 years ago by Ram ▴ 220 • written 4.2 years ago by camillab. ▴ 10

votes

replies

4.4k

views

clusterProfiler sort

updated 7.4 years ago by sghoshucla • 0 • written 9.2 years ago by horcsct ▴ 10

votes

replies

1.7k

views

granges data.frame sort

updated 9.1 years ago by Michael Lawrence ★ 11k • written 9.1 years ago by igor ▴ 50

votes

replies

17k

views

granges genomicranges sort seqnames order

updated 9.6 years ago by yinghua ▴ 30 • written 10.0 years ago by enricoferrero ▴ 660

votes

replies

2.7k

views

grangeslist sort

updated 9.8 years ago by Hervé Pagès 16k • written 9.8 years ago by Johannes Rainer ★ 2.1k

5 results • Page 1 of 1

Recent ...

Replies

Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data by rcreed • 0

The updated version worked well on my data. Thank you!

Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di by James W. MacDonald 67k

The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…

Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…

Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0

Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k

You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…

Votes

Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data

A: TopGO: How to retrieve the gene list related to a GO ID ?

A: Error in DESeqDataSet : some values in assay are not integers

A: correcting the batch effects in Limma and SVA

Awards • All

Scholar to Haibo Liu ▴ 20