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splicer
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using BitSeq data as input for spliceR
bitseq
spliceR
9.0 years ago
elle
▴ 10
2
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4
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2.1k
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Error in SpliceR and GTF file issue
SpliceR
Cuffdiff
updated 8.7 years ago by
deppt002
• 0 • written 8.9 years ago by
mfahim
• 0
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4
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1.6k
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browserSession for Arabidopsis
rtracklayer
Granges
spliceR
updated 8.8 years ago by
Michael Lawrence
★ 11k • written 8.8 years ago by
mfahim
• 0
1
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3
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1.7k
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spliceR error with GTF cummeRbund input
splicer
cummerbund
updated 6.8 years ago by
lmanchon
• 0 • written 7.9 years ago by
weisbeal
▴ 10
0
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1
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1.4k
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Extract sequences corresponding to TCONS IDs from spliceR
splicer
updated 6.3 years ago by
k.vitting.seerup
▴ 120 • written 6.3 years ago by
aditi
▴ 20
1
vote
1
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1.4k
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Running cufflinks for spliceR
Annotation
spliceR
Annotation
spliceR
updated 8.9 years ago by
k.vitting.seerup
▴ 120 • written 9.7 years ago by
hliang
▴ 20
0
votes
1
reply
979
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missing values (NA) in spliceR results
splicer
rnaseq
updated 8.9 years ago by
k.vitting.seerup
▴ 120 • written 9.6 years ago by
hliang
▴ 20
0
votes
1
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1.2k
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results from spliceR
spliceR
updated 8.9 years ago by
k.vitting.seerup
▴ 120 • written 9.1 years ago by
knight2ni
• 0
0
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0
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1.5k
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Differential expression workflow for alternative splicing
dexseq
bitseq
spliceR
9.0 years ago
elle
▴ 10
9 results • Page
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Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…
Comment: Timecourse RNASeq analysis
by
Aurora
• 0
I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Comment: Once again a "Model matrix not full rank"
by
arfranco
▴ 130
But.. How to run a temporal assay?
Comment: Deseq2 and Normalization of RNA sequencing data
by
kcarey
• 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP
by
Gordon Smyth
50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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