Bioconductor Strand

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1.4k

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Gviz strand

5.2 years ago svenbioinf • 0

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3.7k

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rnaseq strand deseq2

8.1 years ago lirongrossmann ▴ 80

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1.2k

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strand rnaseq differential gene expression batch effect counts

8.2 years ago lirongrossmann ▴ 80

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2.0k

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easyrnaseq rnaseq strand

updated 8.5 years ago by Hervé Pagès 16k • written 8.5 years ago by Michael Dondrup ▴ 10

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1.5k

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Granges IRanges gff import.gff3 strand

updated 11.2 years ago by Hervé Pagès 16k • written 11.2 years ago by topher.hamm • 0

5 results • Page 1 of 1

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Comment: p.adjust BH Question by TikTsoksocissalpc • 0

Thanks for sharing your question about RMA limma analysis While working on your experiment, it s always helpful to have some background mu…

Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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