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subSeq
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Can subSeq be used for subsampling and determining RNAseq depth without performing Differential Expression?
subSeq
rarefaction
3.2 years ago
Jirapat
• 0
2
votes
5
replies
4.4k
views
How to use subSeq with DNAStringSet and information of GroupedIRanges?
subseq
Xvector
dnastringset
updated 7.0 years ago by
Hervé Pagès
16k • written 7.0 years ago by
Sophie
• 0
4
votes
7
replies
1.6k
views
how to catch an error when using subseq() in vectorized way
biostrings
subseq
updated 7.2 years ago by
Martin Morgan
25k • written 7.2 years ago by
tobias.kockmann
▴ 20
1
vote
1
reply
1.1k
views
Generating ExpressionSet Objects
r
expressionset
subseq
rnaseq
updated 7.8 years ago by
Martin Morgan
25k • written 7.8 years ago by
rrcutler
▴ 70
4 results • Page
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Answer: How to save the DEXSeq results
by
Michael Love
41k
If you look at the output here: https://bioconductor.org/packages/release/bioc/vignettes/DEXSeq/inst/doc/DEXSeq.html#4_Testing_for_differe…
Answer: Method to find pathways different between 2 groups
by
Robert Castelo
★ 3.3k
Hi, regarding how could you combine the result from each tool, one option is using a so-called "ensembl method", for instance, the package …
Answer: Couldn't connect to server while using "pathways"
by
James W. MacDonald
65k
As ATpoint already noted, you should proceed from the assumption that your audience knows nothing about what you are doing, and provide eno…
Answer: Trim/Filter out-of-bounds GRanges
by
Michael Love
41k
https://support.bioconductor.org/p/73432/#73448
Comment: Couldn't connect to server while using "pathways"
by
Michael Love
41k
You've put the tag "DESeq2" which results in an email to the maintainer, me, that I should respond to a post on the support site. Can you …
Votes
Answer: Method to find pathways different between 2 groups
Answer: Method to find pathways different between 2 groups
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: Method to find pathways different between 2 groups
Comment: Trying to use enrichGO
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