Bioconductor Xvector

Showing : Xvector • reset

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IRanges XVector AtomicList

written 3.7 years ago by Pierre-Luc Germain ▴ 20

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XVector docker Install

4.2 years ago RobKo ▴ 10

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XVector

updated 5.0 years ago by Martin Morgan 25k • written 5.0 years ago by robmaz77 ▴ 20

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S4Vectors IRanges XVector GenomicRanges scran

updated 7.1 years ago by Aaron Lun ★ 29k • written 7.1 years ago by Momo • 0

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bioconductor iranges s4vectors xvector r 3.3.2

updated 7.6 years ago by becker.gabriel ▴ 10 • written 7.6 years ago by chokoiboko • 0

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variantannotation xvector iranges

7.7 years ago Vivek.b ▴ 100

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subseq Xvector dnastringset

updated 8.7 years ago by Hervé Pagès 16k • written 8.7 years ago by Sophie • 0

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xvector

8.8 years ago Charles Plessy ▴ 180

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software error gcrma Xvector iranges

9.5 years ago gary_smith • 0

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Network Cancer IRanges XVector

11.4 years ago Hervé Pagès 16k

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Cancer XVector

11.4 years ago Hervé Pagès 16k

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IRanges GenomicRanges VariantTools XVector IRanges GenomicRanges VariantTools XVector

updated 12.3 years ago by Michael Lawrence ★ 11k • written 12.3 years ago by heyi xiao ▴ 360

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XVector XVector

updated 12.6 years ago by Hervé Pagès 16k • written 12.6 years ago by Pengcheng Yang ▴ 60

13 results • Page 1 of 1

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Comment: Which preprocessing steps are needed before running limpa? by miro165sabo • 0

Hi @gordonsmyth, thank you a lot for very fast and valuable response. I edited the question to provide more details.

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k

I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…

Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k

Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0

Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…

Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0

Hello, I was also wondering about the same issue. Did you figure it out?

Votes

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

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Scholar to Gordon Smyth 53k

Popular Question to Peter Hickey ▴ 760