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subseq
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Can subSeq be used for subsampling and determining RNAseq depth without performing Differential Expression?
subSeq
rarefaction
4.8 years ago
Jirapat
• 0
2
votes
5
replies
5.6k
views
How to use subSeq with DNAStringSet and information of GroupedIRanges?
subseq
Xvector
dnastringset
updated 8.5 years ago by
Hervé Pagès
16k • written 8.5 years ago by
Sophie
• 0
4
votes
7
replies
2.3k
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how to catch an error when using subseq() in vectorized way
biostrings
subseq
updated 8.8 years ago by
Martin Morgan
25k • written 8.8 years ago by
tobias.kockmann
▴ 20
1
vote
1
reply
1.4k
views
Generating ExpressionSet Objects
r
expressionset
subseq
rnaseq
updated 9.4 years ago by
Martin Morgan
25k • written 9.4 years ago by
rrcutler
▴ 70
4 results • Page
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Comment: Generalized edgeR functions
by
Omar
• 0
[ragdoll hit](https://ragdollhitstickman.io/) That actually sounds like a reasonable approach, especially if the overlapping intervals repr…
Comment: upstream git branches of bioc-release
by
TrentonCollier99
• 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments. https://bioc-release.r-univ…
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
by
Ahmed Salah
• 0
Thank you very much! will take that into consideration
Comment: Large logFC but somewhat high FDR
by
JKim
• 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.
Comment: upstream git branches of bioc-release
by
Jeroen
▴ 10
OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.
Votes
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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