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subseq
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Can subSeq be used for subsampling and determining RNAseq depth without performing Differential Expression?
subSeq
rarefaction
4.7 years ago
Jirapat
• 0
2
votes
5
replies
5.6k
views
How to use subSeq with DNAStringSet and information of GroupedIRanges?
subseq
Xvector
dnastringset
updated 8.5 years ago by
Hervé Pagès
16k • written 8.5 years ago by
Sophie
• 0
4
votes
7
replies
2.2k
views
how to catch an error when using subseq() in vectorized way
biostrings
subseq
updated 8.8 years ago by
Martin Morgan
25k • written 8.8 years ago by
tobias.kockmann
▴ 20
1
vote
1
reply
1.4k
views
Generating ExpressionSet Objects
r
expressionset
subseq
rnaseq
updated 9.3 years ago by
Martin Morgan
25k • written 9.3 years ago by
rrcutler
▴ 70
4 results • Page
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Comment: Save the Date for EuroBioC2026 in Turku!
by
jamesbennettki
• 0
That sounds amazing I have always wanted to visit Finland and meet others in the Bioconductor community Events like EuroBioC2026 inspire me…
Answer: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
This should now be resolved
Answer: Question about collapsing ASVs by genus level during DESeq2 analysis
by
Michael Love
43k
I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…
Answer: Integration: Paired-end vs healthy single-end from a different source
by
James W. MacDonald
68k
If by reprocess you mean generate libraries and re-sequence, then that's something you could do. Otherwise the biological and technical dif…
Comment: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Votes
Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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