Bioconductor Subseq

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subSeq rarefaction

4.1 years ago Jirapat • 0

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5.1k

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subseq Xvector dnastringset

updated 7.8 years ago by Hervé Pagès 16k • written 7.8 years ago by Sophie • 0

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7

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biostrings subseq

updated 8.1 years ago by Martin Morgan 25k • written 8.1 years ago by tobias.kockmann ▴ 20

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1.2k

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r expressionset subseq rnaseq

updated 8.7 years ago by Martin Morgan 25k • written 8.7 years ago by rrcutler ▴ 70

4 results • Page 1 of 1

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Answer: Using tximport for kallisto aligned TOIL data by James W. MacDonald 68k

If you just have the transcript data, you probably don't need (and maybe cannot use) `tximport`. Instead you could just do the naive thing …

Answer: Reading gene expression data in GPR format and converting it to xlsx format by James W. MacDonald 68k

Setting aside the inadvisability of putting these data into Excel (and I should point out that these data are not single-cell, but instead …

Comment: concentration tables suitable as input for new packages? by wilkinson • 0

I am grateful for your response. Software such as "Spectra" may parse MS-data to generate tables of concentrations, for instance. But inste…

Comment: Removing UTR from GTF for gene quantification by ATpoint ★ 4.7k

Consider asking at biostars or bioinformatics reddit, since this is not directly related to a Bioconductor problem. Anyway, a couple of th…

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Hoover • 0

I got it! ([Drift Boss][1]) [1]: https://driftbossgame.co

Votes

Answer: Differential expression of proteins using somascan data

Answer: Surprising behavior for DEXseq dispersion estimate plot?

Answer: Handle zero effective gene length when tximport RSEM results

Handle zero effective gene length when tximport RSEM results

How to remove genes with 0 counts in tximport?

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Popular Question to Lluís Revilla Sancho ▴ 760