Bioconductor SubsetByOverlaps

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InteractionSet subsetByOverlaps GenomicInteractions

2.3 years ago Laureano Tomás-Daza ▴ 10

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5.1k

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findOverlaps GPos GenomicRanges subsetByOverlaps

updated 3.8 years ago by James W. MacDonald 68k • written 3.8 years ago by Robert ▴ 10

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11k

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granges genomicranges iranges subsetByOverlaps

updated 3.7 years ago by b.simpson • 0 • written 10.1 years ago by vinod.acear ▴ 50

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2.6k

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genomicranges subsetbyoverlaps granges findoverlaps

8.2 years ago Assa Yeroslaviz ★ 1.5k

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2.2k

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granges findoverlaps subsetbyoverlaps

updated 10.0 years ago by Michael Lawrence ★ 11k • written 10.0 years ago by vinod.acear ▴ 50

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2.1k

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granges genomicranges findoverlaps subsetbyoverlaps

updated 10.0 years ago by Hervé Pagès 16k • written 10.0 years ago by vinod.acear ▴ 50

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Answer: Integration: Paired-end vs healthy single-end from a different source by wba64023 • 0

Interesting comparison! The source differences can definitely impact read quality and bias. Curious to see how you handle normalization bet…

Comment: Could we detect difference at pathway level but not significant different at gen by wba64023 • 0

thanks for sharing! [slope 2][1] [1]: https://slope2.online

Comment: After running samtools, the featureCounts command crashed. by eja.gssssse.r.m • 0

The buffer overflow detected error in your featureCount step usually indicates that the program is trying to write more data into memory …

Comment: gene Set with high AUC score but no cells assigned to cell type by eja.gssssse.r.m • 0

It sounds like your AUCell results may be showing high AUC scores without cell assignment due to thresholding or scoring cutoffs. Think of …

Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k

This should now be resolved

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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