Biostar InteractionSet

Showing : InteractionSet • reset

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replies

202

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InteractionSet

6 months ago noag • 0

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255

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S4 Rcpp InteractionSet IRanges Rle

updated 19 months ago by Aaron Lun ★ 27k • written 19 months ago by lklei001 • 0

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214

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diffHic HiC InteractionSet

updated 21 months ago by Aaron Lun ★ 27k • written 21 months ago by girardot • 0

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494

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genomicinteractions gviz interactionset

updated 3.1 years ago by liz.ingsimmons ▴ 140 • written 3.1 years ago by ferbecneu • 0

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648

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interactionset granges

updated 3.6 years ago by Aaron Lun ★ 27k • written 3.6 years ago by Vinicius Henrique da Silva ▴ 40

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547

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diffhic hic interactionset contactmatrix inflate

updated 4.2 years ago by Aaron Lun ★ 27k • written 4.2 years ago by hwick1 ▴ 20

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788

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diffhic interactionset

5.5 years ago Vivek.b ▴ 100

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647

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InteractionSet structural variants

updated 5.5 years ago by Aaron Lun ★ 27k • written 5.5 years ago by tangming2005 ▴ 170

8 results • Page 1 of 1

Recent ...

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Comment: Trying to follow a gene set analyisis in R by Michael Love 35k

It looks like you only have a single sample.

Comment: Trying to follow a gene set analyisis in R by leonardorosas2001 • 0

I get the following > design = model.matrix(~ es$condition) > design (Intercept) es$conditiondex4 attr(,"assign") [1] 0 1 attr(,"co…

Comment: How to use subjunc for differential splicing analysis? by Yang Liao ▴ 280

Annotation to the *subjunc* aligner helps the aligner to better map the reads. The aligner generates BAM files, which contains mapped reads…

Answer: universalmotif, question about enrich_motifs function and number of hits returne by btremblay ▴ 30

Hi, After doing some digging I've isolated the issue to being related to the threshold calculation which you request with the `threshold…

Answer: DE analysis model matrix for paired samples by Michael Love 35k

Agree with swbarnes2. It just seems like the condition effect is very small. Also I'd double check the metadata. Sometimes samples are swap…

Votes

A: DNAcopy

Comment: Using DiffBind blacklists and greylists with results mapped to BDGP6

Answer: How to use subjunc for differential splicing analysis?

Answer: catchKallisto results are not counts

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