Biostar InteractionSet

Showing : InteractionSet • reset

votes

replies

views

InteractionSet

17 days ago • updated 15 days ago noag • 0

votes

149

views

S4 Rcpp InteractionSet IRanges Rle

updated 13 months ago by Aaron Lun ★ 27k • written 13 months ago by lklei001 • 0

votes

142

views

diffHic HiC InteractionSet

updated 15 months ago by Aaron Lun ★ 27k • written 15 months ago by girardot • 0

votes

replies

403

views

genomicinteractions gviz interactionset

updated 2.6 years ago by liz.ingsimmons ▴ 140 • written 2.6 years ago by ferbecneu • 0

votes

530

views

interactionset granges

updated 3.1 years ago by Aaron Lun ★ 27k • written 3.1 years ago by Vinicius Henrique da Silva ▴ 40

votes

484

views

diffhic hic interactionset contactmatrix inflate

updated 3.7 years ago by Aaron Lun ★ 27k • written 3.7 years ago by hwick1 ▴ 20

vote

replies

728

views

diffhic interactionset

5.0 years ago Vivek.b ▴ 100

votes

578

views

InteractionSet structural variants

updated 5.0 years ago by Aaron Lun ★ 27k • written 5.0 years ago by tangming2005 ▴ 170

8 results • Page 1 of 1

Recent ...

Replies

Comment: featureCounts - paired-end data by Yanfang • 0

Hey Wei shi, May I ask you something related to featureCounts? I have only paired end reads (RNAseq) mapping to its genome by bowtie2, an…

Comment: WGCNA adjust p value by Kevin Blighe 3.2k

Cross-posted: https://www.biostars.org/p/9482927/

Comment: Unique GPos taking into account mcols by Marcel Ramos 540

Hi @maltethodberg We currently do not have a method that does this. Perhaps a `duplicated` method is appropriate but I am not the develop…

Comment: What are these genes ? [How to get Ensembl IDs for them] by abf ▴ 30

Mouse genes are not typically all capitals, but I was able to find a reference to a mouse gene in NCBI to [CH36-217G15][1]. Maybe this is …

Comment: Apparent Ensembl - Entrez gene mis-match in org.Mm.eg.db. by abf ▴ 30

I should note that when I query org.Mm.eg.db using the gene Symbols associated with my differential expression data I find a 1:1 correspond…

Votes

A: Normalized counts of DESeq2 affected by design formula?

A: Finding orthologous human/mouse ENSEMBL IDs

Comment: What are these genes ? [How to get Ensembl IDs for them]

Answer: What lfcSE is dependent upon?

Comment: P value and Adj. P value showing N/A

Awards • All