Bioconductor Subsetbyoverlaps

Showing : subsetbyoverlaps • reset

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InteractionSet subsetByOverlaps GenomicInteractions

18 months ago LaureTomas ▴ 10

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4.2k

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findOverlaps GPos GenomicRanges subsetByOverlaps

updated 3.0 years ago by James W. MacDonald 67k • written 3.0 years ago by Robert ▴ 10

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9.9k

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granges genomicranges iranges subsetByOverlaps

updated 2.9 years ago by b.simpson • 0 • written 9.3 years ago by vinod.acear ▴ 50

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2.3k

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genomicranges subsetbyoverlaps granges findoverlaps

7.4 years ago Assa Yeroslaviz ★ 1.5k

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1.9k

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granges findoverlaps subsetbyoverlaps

updated 9.2 years ago by Michael Lawrence ★ 11k • written 9.2 years ago by vinod.acear ▴ 50

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1.8k

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granges genomicranges findoverlaps subsetbyoverlaps

updated 9.2 years ago by Hervé Pagès 16k • written 9.2 years ago by vinod.acear ▴ 50

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Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Great thanks for posting the issue and sticking with it Annaleigh

Comment: Problems with oarfish + tximport + swish by brown.annaleigh • 0

Awesome possum! Update works!! Thank you so much for the help and guidance!

Comment: Postdoctoral Researcher in Spatial Gene Regulatory Networks underlying Stomatal by iqratechnology4 • 0

Iqra Technology is IT Solutions and Services Company. We are salesforce and Microsoft partner company. https://iqratechnology.com/

Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt? by James W. MacDonald 67k

> BTW, shouldn't you be using keep.lib.sizes = F and re-do the calcNormFactors() after filtering of the dglst low-expression ENSGs, as Gord…

Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Let me see if I can add some code to tximeta to cover this case. I've added an argument `skipRanges` in devel branch which should allow: …

Votes

Answer: Error in download.file for TCGAutils::symbolsToRanges

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Answer: Limma Interaction Effect with Covariates

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