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sushi
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788
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Plotting bed8 with Sushi possible?
sushi
bed
5.6 years ago
maltethodberg
▴ 180
0
votes
0
replies
729
views
plotGenes command Sushi
sushi
plotGenes
6.3 years ago
portia.mcghan
• 0
1
vote
0
replies
985
views
Issues with Sushi manhattanPlot function, cannot plot p-values
sushi
7.6 years ago
snamjoshi87
▴ 40
0
votes
1
reply
1.1k
views
plotBed R data frame - last line plotted with line 1
sushi
plotBed
data.frame
8.0 years ago
waqasnayab
• 0
1
vote
1
reply
1.1k
views
Adding legends to sushi plots produced using plotBed function
sushi
plotBed
updated 8.1 years ago by
dphansti
▴ 10 • written 8.3 years ago by
Dimitris Polychronopoulos
▴ 80
0
votes
1
reply
969
views
Sushi example data not correct?
Sushi
updated 8.1 years ago by
dphansti
▴ 10 • written 8.1 years ago by
Till
▴ 30
0
votes
3
replies
2.0k
views
Plotting gene region using Sushi
R
sushi
updated 8.3 years ago by
dphansti
▴ 10 • written 8.3 years ago by
javier.mendoza
• 0
0
votes
2
replies
1.6k
views
ploting HiC data with Sushi
sushi
updated 8.7 years ago by
Steve Lianoglou
★ 13k • written 8.7 years ago by
Bogdan
▴ 670
8 results • Page
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Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Comment: Too many significant genes when integrating gtex and tcga
by
Michael Love
41k
Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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