Bioconductor T-test

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deseq2 batch sva t-test design matrix

updated 4.4 years ago by Michael Love 40k • written 4.4 years ago by Mozart ▴ 20

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limma t-test

updated 6.0 years ago by James W. MacDonald 63k • written 6.0 years ago by Marek Gierlinski ▴ 10

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EdgeR ANOVA t-test contrast

updated 6.3 years ago by Aaron Lun ★ 28k • written 6.3 years ago by Maiv • 0

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t-test GAGE package Kolmogorov-Smirnov test Gene-Set enrichment

7.2 years ago smt8n • 0

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Comment: LIMMA dupcor() function time issue. by Gordon Smyth 48k

That's ok, but there is nothing to be gained by subsetting 1000 times. It would be better to simply subset 100,000 rows once, although the …

Comment: Specifying evidence channels in STRINGdb by robynne.braun • 0

Also I found prior thread here addressing the same question with response that functionality will be supported someday. This was a few year…

Comment: Problems with FLOWAI by SHASHI • 0

please try this using short path name and keeping your fcs file and wsp file in your local directory https://youtu.be/xLeqE7PNYzA

Comment: DataFrame Construction With Non-standard Column by Hervé Pagès 16k

SimpleList is a List derivative and List derivatives in general don't need protection. For example, a GRangesList object (which is also a L…

Answer: Deseq2, how to model design for comparing Mutant mouse at age 14 days versus Mu by swbarnes2 ★ 1.3k

The Status grouping you show above is good to use if you want to simply compare one subset of samples to another subset. The ~Genotype +…

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Answer: Deseq2, enrichGO and ensembl ID

A: LIMMA dupcor() function time issue.

Answer: Further analysis after limma regression output

A: collapseReplicates in DESeq2

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