Showing : GAGE package • reset
0
votes
0
replies
1.0k
views
GAGE for non model organism
gage package gage
6.4 years ago melkile26 • 0
1
vote
2
replies
1.4k
views
GAGE analysis with the whole or a subset of matrix
gage gage package gene expression matrix gene set analysis
6.4 years ago atakanekiz ▴ 30
5
votes
7
replies
3.0k
views
Gage package; go.gset() function error: argument "go_id" is missing
gage package error
updated 6.6 years ago by 67k • written 6.6 years ago by ▴ 20
0
votes
2
replies
4.0k
views
Cannot open URL 'http://rest.kegg.jp/get/osaNA/kgml': HTTP status was '400 Bad Request'
gage gage package pathview rna-seq
updated 2.8 years ago by • 0 • written 6.8 years ago by • 0
2
votes
4
replies
2.1k
views
Can't find gene list for KEGG genesets
kegg geneset genelist gage package
updated 7.3 years ago by 52k • written 7.3 years ago by ▴ 30
1
vote
0
replies
1.6k
views
DESeq2 - GAGE workflow
gage package deseq2
7.4 years ago sup230 ▴ 30
0
votes
2
replies
1.8k
views
How to extract essential genes from pathway (essGene) using DEseq2/GAGE workflow?
gage gage package
updated 8.1 years ago by ★ 1.6k • written 8.2 years ago by • 0
1
vote
2
replies
1.6k
views
Need to convert gene IDs for GAGE pathway analysis of honey bee RNA-seq data
R gage package rnaseq pathview
8.3 years ago joanito.liberti • 0
0
votes
1
reply
1.1k
views
Question on Gage
gage package path.ids RNA-Seq
8.4 years ago rl1385 • 0
0
votes
0
replies
1.0k
views
GAGE package statistical tests
t-test GAGE package Kolmogorov-Smirnov test Gene-Set enrichment
8.4 years ago smt8n • 0
10 results • Page 1 of 1
Recent ...
Replies
Comment: Feature Counts - potential bug with outfile.jcounts by Gordon Smyth 52k
I agree that the current behavior is not fully satisfactory and, indeed, it has prevented me from using the junction read counts from featu…
Comment: Feature Counts - potential bug with outfile.jcounts by chris2.a.white • 0
Hi Gordon, Sorry, I didn't see the added response to your original answer. I think that would be a great idea; a novel junction to annot…
Comment: Cannot install GO.db and org.Hs.eg.db by Gabriel • 0
The downloaded source packages are in 'C:Users\gabri\AppData\Local\Temp\RtmpailNer\downloaded_packages' Installation paths not writeable, …
Comment: Feature Counts - potential bug with outfile.jcounts by chris2.a.white • 0
Hi Gordon, Thank you for pointing out that FeatureCounts detects junction reads de novo. It is not in the manual, and maybe could be. Give…
Answer: Pre-filtering TPM kallisto for ssGSEA / DESeq2 by Michael Love 43k
I've seen in some papers ~1 TPM for saying something in mouse/human etc. was "minimally expressed". For an average length gene, 10 count…
Votes
Answer: Mapping Between GenBank ID's and Uniprot
Comment: What type of counts data to import for performing Isoform analysis in edgeR
A: Relations used in GO.db GOBPANCESTOR
Relations used in GO.db GOBPANCESTOR
Answer: RSubread output significantly different from bash Subread output
Awards • All
Popular Question to georgii.vdovin • 0
Prophet to syednajeebashraf • 0
Popular Question to Pedro Baldoni ▴ 40
Popular Question to Wei Shi ★ 3.6k
Popular Question to Guillaume Tiberi ▴ 10
Locations • All
The city by the bay, 1 hour ago
China, 1 hour ago
Qatar, 1 hour ago
WEHI, Melbourne, Australia, 1 hour ago
United States, 2 hours ago
Traffic: 632 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6