Showing : GAGE package • reset
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GAGE for non model organism
gage package gage
7.6 years ago melkile26 • 0
1
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2
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1.8k
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GAGE analysis with the whole or a subset of matrix
gage gage package gene expression matrix gene set analysis
7.6 years ago atakanekiz ▴ 30
5
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7
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3.5k
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Gage package; go.gset() function error: argument "go_id" is missing
gage package error
updated 7.8 years ago by 68k • written 7.8 years ago by ▴ 20
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2
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5.0k
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Cannot open URL 'http://rest.kegg.jp/get/osaNA/kgml': HTTP status was '400 Bad Request'
gage gage package pathview rna-seq
updated 4.0 years ago by • 0 • written 8.0 years ago by • 0
2
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4
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3.1k
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Can't find gene list for KEGG genesets
kegg geneset genelist gage package
updated 8.6 years ago by 53k • written 8.6 years ago by ▴ 30
1
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0
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1.9k
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DESeq2 - GAGE workflow
gage package deseq2
8.6 years ago sup230 ▴ 30
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2
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2.2k
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How to extract essential genes from pathway (essGene) using DEseq2/GAGE workflow?
gage gage package
updated 9.3 years ago by ★ 1.6k • written 9.4 years ago by • 0
1
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2
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2.0k
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Need to convert gene IDs for GAGE pathway analysis of honey bee RNA-seq data
R gage package rnaseq pathview
9.6 years ago joanito.liberti • 0
0
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1
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1.4k
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Question on Gage
gage package path.ids RNA-Seq
9.6 years ago rl1385 • 0
0
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0
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1.3k
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GAGE package statistical tests
t-test GAGE package Kolmogorov-Smirnov test Gene-Set enrichment
9.7 years ago smt8n • 0
10 results • Page 1 of 1
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Answer: GSEA error by James W. MacDonald 68k
At a very high level, the way non-model organisms are annotated is by using blast to find orthologs in other species that are well annotate…
Comment: Unable to find ENTREZ IDs by Adithi • 0
Hi James, Thank you so much for your reply. My main goal is to find ortholog genes from chinese hamster gene symbols to mouse gene symbols…
Comment: Unable to find ENTREZ IDs by Adithi • 0
Hi James, Thank you so much for your reply. My main goal is to find ortholog genes from chinese hamster gene symbols to mouse gene symbols…
Answer: Unable to find ENTREZ IDs by James W. MacDonald 68k
Those are the 'symbols', and are a concatenation of LOC and the NCBI Gene ID (what used to be called an Entrez Gene ID). As an example:http…
Answer: Inconsistencies between accessor functions for TxDb databases with selected seql by a2a2hd42aa • 0
Technical inconsistencies in database accessors can disrupt your workflow, but finding a reliable source to download online mobile games sh…
Votes
Answer: GSEA error
Answer: OrgDb for maize
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
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