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tarseqqc
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GTF annotation file for featurecount
SeqGate
TarSeqQC
ExperimentHubSoftware
projectR
updated 3.2 years ago by
ATpoint
★ 4.1k • written 3.2 years ago by
Ashish
• 0
1
vote
4
replies
1.7k
views
TarSeqQC TargetExperiment() Error- failed to stop SOCKcluster cluster-error writing to connection
TarSeqQC
R
ngs
biocparallel
updated 6.9 years ago by
Martin Morgan
25k • written 6.9 years ago by
bioinf
▴ 10
0
votes
2
replies
1.1k
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TarSeqQC TargetExperiment() example takes forever
TarSeqQC
updated 6.9 years ago by
bioinf
▴ 10 • written 7.4 years ago by
jls2282
• 0
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Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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