Showing : tidybulk • reset
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4
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paired tests with tidybulk and edgeR
edgeR R tidyverse tidybulk
4 months ago Amit Indap ▴ 10
3
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5
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284
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Design for DE analysis in tidybulk
DESeq2 designmatrix edgeR limma tidybulk
updated 8 weeks ago by 39k • written 8 weeks ago by ▴ 10
2 results • Page 1 of 1
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Answer: Multiple issues reading in peak sets with Diffbind by Rory Stark ★ 4.7k
It helps if you include the software versions you are using (output of `sessionInfo()`). If you could send me a copy of one of your peak…
Comment: Failed to install Biobase by James W. MacDonald 62k
If you paste https://bioconductor.org/packages/3.16/bioc/bin/windows/contrib/4.2/Biobase_2.58.0.zip into a browser, does it ask you where t…
Comment: Merging samples from different sequencing runs by Jacky • 0
thanks for the awesome information.
Comment: deseq2 normalization and statistical method by ATpoint ★ 2.4k
Either the company provides you full code and software versions or (imo) their anslysis is basically useless as not reproducible.
Answer: HISAT2 mapping by ATpoint ★ 2.4k
hisat2 is not a Bioconductor package. Please ask at biostars.org or elsewhere.
Votes
Warning message as converting gene Symbol to ENTREZID
Filtering low intensity probes in microarray data
Comment: deseq2 normalization and statistical method
Answer: deseq2 normalization and statistical method
Answer: Question about filter by expression (filterByExpr) in edgeR
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Popular Question to Sam ▴ 10
Scholar to ATpoint ★ 2.4k
Scholar to Gordon Smyth 47k
Popular Question to James W. MacDonald 62k
Commentator to Johannes Rainer ★ 2.0k
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