Bioconductor Timeseriesexperiment

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Proteomics limma repeatedmeasures TimeSeriesExperiment

18 months ago proteome_AO • 0

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1.9k

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R GillespieColin ArrayExpress import TimeSeriesExperiment

updated 7 months ago by jacorvar ▴ 40 • written 18 months ago by eraldagjika ▴ 20

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626

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DESeq2 TimeSeriesExperiment

updated 19 months ago by Michael Love 41k • written 19 months ago by Jason • 0

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DESeq2 single-timeseries TimeSeriesExperiment

updated 19 months ago by Michael Love 41k • written 19 months ago by Jigyasa • 0

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642

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DESeq2 MultipleFactors TimeSeriesExperiment

updated 20 months ago by Michael Love 41k • written 20 months ago by Maria • 0

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798

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TimeSeriesExperiment RNASeq design DESeq2

updated 2.4 years ago by Michael Love 41k • written 2.4 years ago by Kesava • 0

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811

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TimeSeriesExperiment Regression top limma

updated 2.7 years ago by James W. MacDonald 65k • written 2.7 years ago by Eleni • 0

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1.7k

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LRT Design DESeq2 doseResponse TimeSeriesExperiment

updated 2.7 years ago by Michael Love 41k • written 2.7 years ago by Mari • 0

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791

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TimeSeriesExperiment

updated 3.0 years ago by Michael Love 41k • written 3.0 years ago by curiousmind007 ▴ 10

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960

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QTL fourier TimeSeriesExperiment timecoursedata

3.1 years ago Daphne • 0

10 results • Page 1 of 1

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Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0

Thank you Tim, this is a great help in getting me started!

Comment: Too many significant genes when integrating gtex and tcga by Michael Love 41k

Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…

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Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

A: Print Differentially Expressed Exons From Dexseq Results

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