Bioconductor Timeseriesexperiment

Showing : timeseriesexperiment • reset

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R GillespieColin ArrayExpress import TimeSeriesExperiment

updated 7 months ago by jacorvar ▴ 40 • written 19 months ago by eraldagjika ▴ 20

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939

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Proteomics limma repeatedmeasures TimeSeriesExperiment

18 months ago proteome_AO • 0

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1.7k

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LRT Design DESeq2 doseResponse TimeSeriesExperiment

updated 2.7 years ago by Michael Love 42k • written 2.7 years ago by Mari • 0

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806

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TimeSeriesExperiment RNASeq design DESeq2

updated 2.5 years ago by Michael Love 42k • written 2.5 years ago by Kesava • 0

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817

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TimeSeriesExperiment Regression top limma

updated 2.7 years ago by James W. MacDonald 65k • written 2.7 years ago by Eleni • 0

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782

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DESeq2 single-timeseries TimeSeriesExperiment

updated 20 months ago by Michael Love 42k • written 20 months ago by Jigyasa • 0

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635

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DESeq2 TimeSeriesExperiment

updated 19 months ago by Michael Love 42k • written 20 months ago by Jason • 0

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652

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DESeq2 MultipleFactors TimeSeriesExperiment

updated 20 months ago by Michael Love 42k • written 20 months ago by Maria • 0

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797

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TimeSeriesExperiment

updated 3.0 years ago by Michael Love 42k • written 3.0 years ago by curiousmind007 ▴ 10

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975

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QTL fourier TimeSeriesExperiment timecoursedata

3.1 years ago Daphne • 0

10 results • Page 1 of 1

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Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k

Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.

Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k

Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…

Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…

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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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