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GSEA Limma preranked GSEA tTest

updated 6.1 years ago by Gordon Smyth 51k • written 6.1 years ago by imalumberjack ▴ 10

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3

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1.5k

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r kruskal ttest nonparametric

6.8 years ago bhgyu ▴ 30

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3

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1.7k

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limma genefilter ttest clustering TPM

7.0 years ago lirongrossmann ▴ 80

7

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11

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3.9k

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bsseq dmr ttest pvalue

updated 8.6 years ago by James W. MacDonald 67k • written 8.6 years ago by enricoferrero ▴ 660

4 results • Page 1 of 1

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Comment: ı cant install clusterprofiler on my Ubuntu 20.04.6 LTS by semra • 0

``` >BiocManager::install(version = "3.19", lib = "~/R/x86_64-pc-linux-gnu-library/4.4") 'getOption("repos")' replaces Bioconductor standar…

Comment: [DESeq2] time series strain-specific differences over time by Michael Love 42k

I will say it is possible but a bit cumbersome to perform an LRT for 60 vs 0. You would have to re-run `DESeq()` or minimally `nbinomLRT` w…

Comment: [DESeq2] time series strain-specific differences over time by Michael Love 42k

Correct: https://www.bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#i-ran-a-likelihood-ratio-test-but-results…

Comment: concentration tables suitable as input for new packages? by katja.danielzik • 0

Thank you for your reply! "Spectra" indeed is another example for software processing MS-data to p.e. concentration tables. My package howe…

Comment: AffylmGUI does not start wit R 4.4.1 by richardallenfriedmanbrooklyn ▴ 20

Gordon, Thank you as always. I have tried the instructions you gave before my most recent post. The patch is almost certainly beyond my ca…

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C: [DESeq2] time series strain-specific differences over time

Comment: [DESeq2] time series strain-specific differences over time

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