Bioconductor Upgrade

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upgrade BiocManager

updated 5.1 years ago by Martin Morgan 25k • written 5.1 years ago by Henrik Bengtsson ★ 2.4k

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upgrade

updated 6.1 years ago by Martin Morgan 25k • written 6.1 years ago by zacekm ▴ 10

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r update upgrade bioclite

updated 8.1 years ago by James W. MacDonald 67k • written 8.1 years ago by Lna • 0

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bioconductor biocupgrade upgrade update bioclite

8.6 years ago enricoferrero ▴ 660

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bioconductor upgrade installr Windows8 R 3.2

9.6 years ago svlachavas ▴ 840

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upgrade r update

updated 9.7 years ago by Dan Tenenbaum ★ 8.2k • written 9.7 years ago by daniil.sarkisyan ▴ 10

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upgrade new version backwards compatibility

updated 9.9 years ago by Steve Lianoglou ★ 13k • written 9.9 years ago by jrdemasi • 0

7 results • Page 1 of 1

Recent ...

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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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