Bioconductor Biocupgrade

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548

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Logolas old-version BiocUpgrade

updated 5.6 years ago by James W. MacDonald 64k • written 5.6 years ago by Kushal K Dey ▴ 10

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1.1k

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bioclite biocupgrade

updated 7.6 years ago by Martin Morgan 25k • written 7.6 years ago by dan.gatti • 0

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6.7k

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bioconductor biocupgrade upgrade update bioclite

7.6 years ago enricoferrero ▴ 660

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1.5k

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GenomicRanges biocupgrade

updated 7.6 years ago by Dan Tenenbaum ★ 8.2k • written 7.6 years ago by Vinicius Henrique da Silva ▴ 40

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bioconductor biocupgrade

updated 7.8 years ago by Martin Morgan 25k • written 7.8 years ago by laksharikrish • 0

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biocinstaller biocupgrade

updated 8.0 years ago by James W. MacDonald 64k • written 8.0 years ago by ail27 • 0

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BiocUpgrade Rstudio Bioconductor R3.2.2

8.1 years ago svlachavas ▴ 820

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1.7k

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bioclite biocinstaller biocupgrade

updated 9.1 years ago by Dan Tenenbaum ★ 8.2k • written 9.1 years ago by Simon Coetzee ▴ 50

8 results • Page 1 of 1

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Answer: RNASeq time course analysis, missing time points for control by Gordon Smyth 48k

You could fit a spline trend with design matrix `treatment+spline`. Then it won't matter than the control and treatment times don't match u…

Comment: DESeq2 - groups with biological replicates from the same patient by Oscar • 0

Thanks James for your helpful response. This particular experimental set up is very common in iPSC studies, where multiple differentiations…

Comment: DESeq2 test for synergistic vs additive effects by Jay • 0

Why is TrtAB - TrtA - TrtB + Control "not really a thing"? i came to this forum answer when attempting to use EdgeR to answer a similar que…

Comment: NCBI protein conversion to CDNA and NCBI gene (in R) by Gordon Smyth 48k

Continuation of https://support.bioconductor.org/p/9155428/

Comment: Why is DMRcate not available for Bioconductor version 3.18? by Tim Peters ▴ 150

Thanks Daniel, Gordon and Lori for flagging this. DSS is only needed for the vignette so I'll remove that section, plus the dependency, som…

Votes

Answer: Confused about the CPM and TMM normalization in edgeR

Answer: Differential gene expression analysis

Comment: Why is DMRcate not available for Bioconductor version 3.18?

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