Bioconductor R update

Showing : r update • reset

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bioconductor biocgenerics ubuntu package updates r update

6.9 years ago siinemselvi • 0

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clusterprofiler package installation r update

updated 7.4 years ago by tjiagoM ▴ 10 • written 7.4 years ago by klv2706w ▴ 10

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r update upgrade bioclite

updated 7.9 years ago by James W. MacDonald 67k • written 7.9 years ago by Lna • 0

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r update

updated 9.2 years ago by Martin Morgan 25k • written 9.2 years ago by filip.roudnicky • 0

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biocinstaller r update

9.4 years ago meeta.mistry ▴ 30

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15k

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upgrade r update

updated 9.5 years ago by Dan Tenenbaum ★ 8.2k • written 9.5 years ago by daniil.sarkisyan ▴ 10

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R update

updated 9.9 years ago by James W. MacDonald 67k • written 9.9 years ago by AJC ▴ 10

7 results • Page 1 of 1

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Comment: heatmap with batch effect by James W. MacDonald 67k

When you use `removeBatchEffect` it is simply computing the mean expression for each group and subtracting that out. If you have variabilit…

Comment: Highly DE genes but small count difference within conditions by bioshot.com • 0

These are the MA plot for design=~sex+genotype and boxplots with `boxplot(log10(counts(dds)+1))` ![MA plot][1] ![sample_boxplot][2] ![box][…

Comment: miRTarRnaseq library by María Calvo • 0

Hello, Im using "Part3- Identify significant miRNA mRNA relationships for 2 time points from fold changes". In mRNA data and miRNA data, th…

Comment: heatmap with batch effect by tothuhien • 0

Hi, thank you very much for your reply. Yes what you said is true. Sorry I forgot to say that this is a just subset of samples. There are m…

Comment: Highly DE genes but small count difference within conditions by Michael Love 42k

TPM is not a robust scaling method and can be influenced by changes in global distribution. What do you get with an MA plot. Can you high…

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GSVA ssGSEA vs. Broad implementation of ssGSEA

Answer: How to control batch effect if Group and batch are same?

Comment: Convert HGVS Representation back to Reference Genome Coordinates

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