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Biocgenerics updating problem on ubuntu 17.10
bioconductor
biocgenerics
ubuntu
package updates
r update
6.4 years ago
siinemselvi
• 0
3
votes
3
replies
3.3k
views
problem reinstalling Bioconductor package 'clusterProfiler' after updating R to 3.4.0
clusterprofiler
package installation
r update
updated 6.9 years ago by
tjiagoM
▴ 10 • written 7.0 years ago by
klv2706w
▴ 10
2
votes
1
reply
4.6k
views
Upgrade to Bioconductor 3.4 - problems with R
r update
upgrade
bioclite
updated 7.4 years ago by
James W. MacDonald
65k • written 7.4 years ago by
Lna
• 0
0
votes
2
replies
1.7k
views
package ‘virtualArray’ is not available (for R version 3.2.1)
r update
updated 8.8 years ago by
Martin Morgan
25k • written 8.8 years ago by
filip.roudnicky
• 0
3
votes
11
replies
6.3k
views
Problems getting Bioc 3.1 after upgrade to R_3.2.0
biocinstaller
r update
9.0 years ago
meeta.mistry
▴ 30
3
votes
11
replies
14k
views
Problems updating Bioconductor with R 3.2.0
upgrade
r update
updated 9.0 years ago by
Dan Tenenbaum
★ 8.2k • written 9.0 years ago by
daniil.sarkisyan
▴ 10
2
votes
2
replies
1.9k
views
R 3.1.1 - Update error
R update
updated 9.4 years ago by
James W. MacDonald
65k • written 9.4 years ago by
AJC
▴ 10
7 results • Page
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Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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