Bioconductor Vanillaice

Showing : vanillaice • reset

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1.2k

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crlmm vanillaice

9.6 years ago Shi, Tao ▴ 720

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1.6k

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SNP6 crlmm vanillaice vanillaice crlmm cnv

updated 9.7 years ago by rscharpf • 0 • written 9.7 years ago by cafelumiere12 ▴ 20

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SNP affy VanillaICE SNP affy VanillaICE

12.8 years ago Rob Scharpf ▴ 250

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1.3k

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Proteomics VanillaICE Proteomics VanillaICE

updated 13.2 years ago by Valerie Obenchain ★ 6.8k • written 13.2 years ago by Francesco Mancuso ▴ 110

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Annotation Cancer VanillaICE crlmm Annotation Cancer VanillaICE crlmm

13.3 years ago Daniel Rico ▴ 110

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SNP Cancer graph oligo SNPchip oligoClasses VanillaICE crlmm SNP Cancer graph oligo

15.7 years ago Min-Han Tan ▴ 40

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1.7k

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Annotation Cancer Breast VanillaICE copynumber Annotation Cancer Breast VanillaICE

16.2 years ago Steven McKinney ▴ 310

7 results • Page 1 of 1

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Comment: Differing results from plotMDS and PCAtools by otislinker345 • 0

@ [geometry dash lite][1]: Thanks for your answer. This is what I'm looking for. [1]: https://geometrydashlite.online

Comment: Postdoctoral Researcher in Spatial Gene Regulatory Networks underlying Stomatal by iqratechnology4 • 0

Iqra Technology is IT Solutions and Services Company. We are salesforce and Microsoft partner company. https://iqratechnology.com/

Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt? by James W. MacDonald 67k

> BTW, shouldn't you be using keep.lib.sizes = F and re-do the calcNormFactors() after filtering of the dglst low-expression ENSGs, as Gord…

Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Let me see if I can add some code to tximeta to cover this case. I've added an argument `skipRanges` in devel branch which should allow: …

Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt? by Jonathan ▴ 10

Thank you; I was indeed using `DGEList` on the count matrix, but with the multiple edits of the post I forgot to include this step. BTW, …

Votes

Answer: Error in download.file for TCGAutils::symbolsToRanges

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Answer: Limma Interaction Effect with Covariates

Comment: DESeq2 for single cell pseudobulk processing

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